Variant report
| Variant | rs11922548 |
|---|---|
| Chromosome Location | chr3:159077414-159077415 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11914905 | 1.00[EUR][1000 genomes] |
| rs11918908 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11922600 | 1.00[EUR][1000 genomes] |
| rs11923368 | 1.00[AMR][1000 genomes] |
| rs16830241 | 1.00[EUR][1000 genomes] |
| rs58015192 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60532575 | 1.00[EUR][1000 genomes] |
| rs61243717 | 1.00[AMR][1000 genomes] |
| rs61793163 | 1.00[EUR][1000 genomes] |
| rs61793164 | 1.00[EUR][1000 genomes] |
| rs61795190 | 0.89[EUR][1000 genomes] |
| rs61795191 | 1.00[EUR][1000 genomes] |
| rs61795196 | 1.00[EUR][1000 genomes] |
| rs61795203 | 1.00[EUR][1000 genomes] |
| rs61795204 | 1.00[EUR][1000 genomes] |
| rs61795245 | 1.00[EUR][1000 genomes] |
| rs61795248 | 1.00[EUR][1000 genomes] |
| rs61795249 | 1.00[EUR][1000 genomes] |
| rs61795255 | 1.00[EUR][1000 genomes] |
| rs61795446 | 1.00[EUR][1000 genomes] |
| rs61795447 | 1.00[EUR][1000 genomes] |
| rs61796065 | 1.00[EUR][1000 genomes] |
| rs61796066 | 1.00[EUR][1000 genomes] |
| rs61796067 | 1.00[EUR][1000 genomes] |
| rs61796069 | 1.00[EUR][1000 genomes] |
| rs61796070 | 1.00[EUR][1000 genomes] |
| rs61796097 | 1.00[EUR][1000 genomes] |
| rs6441252 | 1.00[AMR][1000 genomes] |
| rs6761991 | 1.00[EUR][1000 genomes] |
| rs6778236 | 1.00[AMR][1000 genomes] |
| rs6810109 | 1.00[AMR][1000 genomes] |
| rs73874513 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73874515 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73877528 | 1.00[AMR][1000 genomes] |
| rs73877534 | 1.00[AMR][1000 genomes] |
| rs7610535 | 1.00[AMR][1000 genomes] |
| rs7629027 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159076400-159077600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr3:159076400-159080000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr3:159076400-159080400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
