Variant report

Variant	rs73874513
Chromosome Location	chr3:159076330-159076331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11918908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922548	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923368	1.00[AMR][1000 genomes]
rs34202807	0.88[AFR][1000 genomes]
rs58015192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59583574	0.90[AFR][1000 genomes]
rs61243717	1.00[AMR][1000 genomes]
rs6441252	1.00[AMR][1000 genomes]
rs6778236	1.00[AMR][1000 genomes]
rs6810109	1.00[AMR][1000 genomes]
rs73874515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877528	1.00[AMR][1000 genomes]
rs73877534	1.00[AMR][1000 genomes]
rs7610535	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159073800-159076400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:159074000-159076400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:159074800-159076400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:159075200-159076400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:159075200-159076400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:159075200-159076400	Enhancers	Right Atrium	heart
7	chr3:159075600-159076400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:159076000-159076400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:159076000-159076400	Bivalent Enhancer	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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