Variant report

Variant	rs73877534
Chromosome Location	chr3:158908278-158908279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11918908	1.00[AMR][1000 genomes]
rs11922548	1.00[AMR][1000 genomes]
rs11923368	1.00[AMR][1000 genomes]
rs58015192	1.00[AMR][1000 genomes]
rs61243717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441252	1.00[AMR][1000 genomes]
rs6778236	1.00[AMR][1000 genomes]
rs6810109	1.00[AMR][1000 genomes]
rs73874513	1.00[AMR][1000 genomes]
rs73874515	1.00[AMR][1000 genomes]
rs73877528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610535	1.00[AMR][1000 genomes]
rs7646725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158903200-158909200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:158906600-158909200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:158907400-158910000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:158907400-158910000	Enhancers	Osteobl	bone
5	chr3:158907400-158910400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:158907400-158910400	Enhancers	HUVEC	blood vessel
7	chr3:158907600-158909400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:158907600-158909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:158907600-158909800	Enhancers	NHLF	lung
10	chr3:158907600-158910000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:158907600-158910000	Enhancers	HMEC	breast
12	chr3:158907600-158910200	Enhancers	NH-A	brain
13	chr3:158907600-158910800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:158907800-158910200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:158908000-158909400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:158908200-158908800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:158908200-158909200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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