Variant report

Variant	rs61795204
Chromosome Location	chr3:158994549-158994550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11914905	1.00[EUR][1000 genomes]
rs11922548	1.00[EUR][1000 genomes]
rs11922600	1.00[EUR][1000 genomes]
rs16830241	1.00[EUR][1000 genomes]
rs58015192	1.00[EUR][1000 genomes]
rs60532575	1.00[EUR][1000 genomes]
rs61793163	1.00[EUR][1000 genomes]
rs61793164	1.00[EUR][1000 genomes]
rs61795161	1.00[AFR][1000 genomes]
rs61795162	1.00[AFR][1000 genomes]
rs61795165	1.00[AFR][1000 genomes]
rs61795167	1.00[AFR][1000 genomes]
rs61795169	1.00[AFR][1000 genomes]
rs61795189	1.00[AFR][1000 genomes]
rs61795190	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61795191	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61795192	1.00[AFR][1000 genomes]
rs61795193	1.00[AFR][1000 genomes]
rs61795195	1.00[AFR][1000 genomes]
rs61795196	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61795203	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61795205	1.00[AFR][1000 genomes]
rs61795245	1.00[EUR][1000 genomes]
rs61795248	1.00[EUR][1000 genomes]
rs61795249	1.00[EUR][1000 genomes]
rs61795255	1.00[EUR][1000 genomes]
rs61795446	1.00[EUR][1000 genomes]
rs61795447	1.00[EUR][1000 genomes]
rs61796065	1.00[EUR][1000 genomes]
rs61796066	1.00[EUR][1000 genomes]
rs61796067	1.00[EUR][1000 genomes]
rs61796069	1.00[EUR][1000 genomes]
rs61796070	1.00[EUR][1000 genomes]
rs61796097	1.00[EUR][1000 genomes]
rs6761991	1.00[EUR][1000 genomes]
rs7629027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158991200-158995400	Active TSS	Fetal Brain Female	brain
2	chr3:158992000-158998200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:158993600-158994600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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