Variant report

Variant	rs61801567
Chromosome Location	chr1:160561701-160561702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:160547111..160549425-chr1:160559538..160562208,2	K562	blood:
2	chr1:160555941..160557900-chr1:160560881..160563752,3	K562	blood:
3	chr1:160555941..160557860-chr1:160560881..160563752,2	K562	blood:

Variant related genes	Relation type
ENSG00000066294	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1055880	0.81[EUR][1000 genomes]
rs11265452	0.83[EUR][1000 genomes]
rs11583402	0.85[EUR][1000 genomes]
rs11585738	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11590035	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1394078	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs151607	0.82[EUR][1000 genomes]
rs16832283	0.83[EUR][1000 genomes]
rs1726	0.84[EUR][1000 genomes]
rs17381453	0.88[EUR][1000 genomes]
rs17385878	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1809963	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2753260	0.82[EUR][1000 genomes]
rs3733264	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3733265	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3733266	0.81[EUR][1000 genomes]
rs3766385	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3766389	0.81[EUR][1000 genomes]
rs4145897	0.85[EUR][1000 genomes]
rs5002947	0.84[EUR][1000 genomes]
rs55841347	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56040770	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56168064	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56367214	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61801562	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61801564	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61801565	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61802604	0.80[EUR][1000 genomes]
rs61802605	0.85[EUR][1000 genomes]
rs61802606	0.88[EUR][1000 genomes]
rs61802608	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6662093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6670721	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67197441	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72708832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7418241	0.85[EUR][1000 genomes]
rs7539982	0.80[EUR][1000 genomes]
rs7550771	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs912582	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61801567	CD84	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160555600-160575200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:160558000-160575400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:160561400-160561800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:160561600-160562200	Enhancers	Monocytes-CD14+_RO01746	blood

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