Variant report

Variant	rs72708832
Chromosome Location	chr1:160529058-160529059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1055880	0.88[EUR][1000 genomes]
rs11577695	0.84[AMR][1000 genomes]
rs11583402	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11585738	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590035	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1394078	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17381453	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17385878	0.84[EUR][1000 genomes]
rs1809963	0.83[EUR][1000 genomes]
rs2083128	0.81[EUR][1000 genomes]
rs3733264	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733265	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733266	0.88[EUR][1000 genomes]
rs3755898	0.82[EUR][1000 genomes]
rs3766384	0.82[EUR][1000 genomes]
rs3766385	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766387	0.82[EUR][1000 genomes]
rs3766389	0.88[EUR][1000 genomes]
rs4145897	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55841347	0.83[EUR][1000 genomes]
rs56040770	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56168064	0.81[EUR][1000 genomes]
rs56367214	0.83[EUR][1000 genomes]
rs61801562	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61801564	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61801565	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61801567	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61802603	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61802604	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61802605	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61802606	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61802608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61802610	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6662093	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6670721	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697596	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6699346	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67197441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708818	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7418241	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7539982	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs912582	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160519800-160531000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:160522200-160529600	Weak transcription	Stomach Mucosa	stomach
3	chr1:160523000-160543200	Weak transcription	Gastric	stomach
4	chr1:160524000-160531400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:160527000-160529800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:160527200-160529200	Enhancers	Thymus	Thymus
7	chr1:160527400-160529200	Weak transcription	Primary B cells from cord blood	blood
8	chr1:160527400-160529200	Enhancers	Fetal Thymus	thymus
9	chr1:160527600-160529800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:160527600-160529800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:160527800-160535200	Weak transcription	Pancreas	Pancrea
12	chr1:160528000-160529400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr1:160528000-160530200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr1:160528000-160530400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:160528000-160531400	Enhancers	Dnd41	blood
16	chr1:160528200-160531800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:160528400-160530200	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr1:160528600-160529600	Enhancers	Primary T cells from cord blood	blood
19	chr1:160528600-160530000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:160528600-160531600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:160528800-160529200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:160528800-160529200	Active TSS	GM12878-XiMat	blood
23	chr1:160528800-160530800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:160529000-160529200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:160529000-160529200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr1:160529000-160529200	Enhancers	K562	blood
27	chr1:160529000-160529400	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr1:160529000-160530400	Active TSS	Primary T cells fromperipheralblood	blood
29	chr1:160529000-160532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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