Variant report

Variant	rs61824934
Chromosome Location	chr1:228999366-228999367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:228987923..228989453-chr1:228998379..229000455,2	MCF-7	breast:
2	chr1:228997846..229000671-chr1:229058465..229061027,2	MCF-7	breast:
3	chr1:228990068..228992549-chr1:228998350..229000096,2	K562	blood:
4	chr1:228998698..229000541-chr1:229004320..229006815,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61824935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61824939	1.00[AMR][1000 genomes]
rs61825704	1.00[AMR][1000 genomes]
rs61825711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870365	chr1:228788356-229267904	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv549299	chr1:228793246-229455876	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228993400-229000800	Enhancers	Fetal Intestine Small	intestine
2	chr1:228994000-228999600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:228994800-229000600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:228994800-229000600	Enhancers	Stomach Mucosa	stomach
5	chr1:228994800-229004600	Enhancers	Fetal Intestine Large	intestine
6	chr1:228996000-229000600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:228996000-229000600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:228996000-229000600	Enhancers	Pancreas	Pancrea
9	chr1:228996200-229000800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:228996400-229008200	Enhancers	Fetal Muscle Leg	muscle
11	chr1:228996600-229000600	Enhancers	Liver	Liver
12	chr1:228996800-228999400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:228996800-229000600	Enhancers	Gastric	stomach
14	chr1:228996800-229000800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:228997000-228999400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr1:228997000-229001800	Weak transcription	Fetal Brain Female	brain
17	chr1:228997200-229000200	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:228997200-229002200	Weak transcription	Right Atrium	heart
19	chr1:228997600-228999600	Enhancers	Hela-S3	cervix
20	chr1:228997600-229005000	Enhancers	Fetal Thymus	thymus
21	chr1:228997800-228999400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:228997800-228999800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:228997800-229000000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:228997800-229002000	Weak transcription	Small Intestine	intestine
25	chr1:228997800-229002000	Enhancers	HepG2	liver
26	chr1:228998000-228999400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:228998000-228999800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:228998000-229000000	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:228998000-229000200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr1:228998000-229000600	Enhancers	A549	lung
31	chr1:228998200-228999800	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:228998200-229000600	Enhancers	Fetal Lung	lung
33	chr1:228998200-229001800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:228998400-228999400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:228998400-228999400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr1:228998400-228999600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:228998400-229000600	Enhancers	Lung	lung
38	chr1:228998400-229000800	Enhancers	Placenta	Placenta
39	chr1:228998600-228999600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
40	chr1:228998600-229000600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr1:228998600-229000600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:228998600-229002200	Weak transcription	NHLF	lung
43	chr1:228998800-228999600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr1:228998800-228999600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:228998800-229000600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr1:228998800-229000600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr1:228998800-229000600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr1:228998800-229000800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr1:228998800-229002600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr1:228998800-229003600	Weak transcription	Spleen	Spleen

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