Variant report

Variant	rs61824939
Chromosome Location	chr1:229039729-229039730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:229037576..229040340-chr1:229355888..229358581,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61824934	1.00[AMR][1000 genomes]
rs61824935	1.00[AMR][1000 genomes]
rs61825704	1.00[AMR][1000 genomes]
rs61825711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870365	chr1:228788356-229267904	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv549299	chr1:228793246-229455876	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:229034200-229039800	Enhancers	Fetal Thymus	thymus
2	chr1:229034200-229041400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:229034400-229039800	Enhancers	Placenta	Placenta
4	chr1:229034400-229043400	Enhancers	Fetal Brain Male	brain
5	chr1:229035000-229041200	Enhancers	Fetal Stomach	stomach
6	chr1:229035000-229042200	Enhancers	Fetal Lung	lung
7	chr1:229035200-229039800	Enhancers	Brain Substantia Nigra	brain
8	chr1:229035400-229040000	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:229036200-229040200	Enhancers	Fetal Muscle Trunk	muscle
10	chr1:229037000-229039800	Enhancers	Adipose Nuclei	Adipose
11	chr1:229037400-229039800	Enhancers	Pancreas	Pancrea
12	chr1:229037600-229046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:229037800-229039800	Enhancers	Brain Angular Gyrus	brain
14	chr1:229037800-229039800	Enhancers	Ovary	ovary
15	chr1:229037800-229040200	Enhancers	Lung	lung
16	chr1:229038000-229039800	Enhancers	Fetal Kidney	kidney
17	chr1:229038000-229040200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:229038000-229040800	Enhancers	Hela-S3	cervix
19	chr1:229038200-229039800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:229038200-229039800	Enhancers	Stomach Mucosa	stomach
21	chr1:229038200-229040000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:229038400-229039800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:229038400-229039800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:229038400-229039800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:229038400-229039800	Enhancers	Liver	Liver
26	chr1:229038400-229039800	Enhancers	HUVEC	blood vessel
27	chr1:229038400-229039800	Enhancers	NH-A	brain
28	chr1:229038400-229040200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:229038600-229039800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:229038600-229039800	Enhancers	Brain Cingulate Gyrus	brain
31	chr1:229038600-229039800	Enhancers	Brain Germinal Matrix	brain
32	chr1:229038600-229039800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr1:229038600-229039800	Enhancers	Fetal Intestine Small	intestine
34	chr1:229038600-229039800	Enhancers	Right Atrium	heart
35	chr1:229038600-229039800	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr1:229038600-229039800	Enhancers	NHLF	lung
37	chr1:229038600-229040000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:229038800-229039800	Enhancers	Fetal Intestine Large	intestine
39	chr1:229038800-229039800	Flanking Active TSS	HepG2	liver
40	chr1:229038800-229040400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr1:229039200-229039800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr1:229039200-229039800	Enhancers	Colon Smooth Muscle	Colon
43	chr1:229039200-229039800	Enhancers	Right Ventricle	heart
44	chr1:229039400-229039800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr1:229039400-229039800	Enhancers	Brain Hippocampus Middle	brain
46	chr1:229039400-229039800	Enhancers	Left Ventricle	heart
47	chr1:229039600-229039800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:229039600-229039800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:229039600-229039800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:229039600-229039800	Enhancers	Duodenum Smooth Muscle	Duodenum

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