Variant report

Variant	rs61824935
Chromosome Location	chr1:229005554-229005555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:229003665..229006648-chr1:229008143..229011030,2	MCF-7	breast:
2	chr1:229004083..229006014-chr1:229011677..229014069,3	MCF-7	breast:
3	chr1:228998698..229000541-chr1:229004320..229006815,2	K562	blood:
4	chr1:228983099..228984779-chr1:229003325..229005694,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61824934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61824939	1.00[AMR][1000 genomes]
rs61825704	1.00[AMR][1000 genomes]
rs61825711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870365	chr1:228788356-229267904	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv549299	chr1:228793246-229455876	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228996400-229008200	Enhancers	Fetal Muscle Leg	muscle
2	chr1:229000600-229005800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:229000600-229007200	Weak transcription	Adipose Nuclei	Adipose
4	chr1:229001400-229008000	Enhancers	Brain Hippocampus Middle	brain
5	chr1:229001600-229008000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:229001800-229007200	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:229001800-229008400	Enhancers	Brain Substantia Nigra	brain
8	chr1:229002000-229007000	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:229003000-229007000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:229003200-229005800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:229003200-229006200	Weak transcription	Right Atrium	heart
12	chr1:229003200-229011400	Weak transcription	Ovary	ovary
13	chr1:229003600-229005800	Weak transcription	Fetal Kidney	kidney
14	chr1:229003600-229007600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:229003800-229005800	Weak transcription	Fetal Lung	lung
16	chr1:229003800-229008000	Weak transcription	Small Intestine	intestine
17	chr1:229003800-229008200	Enhancers	Brain Angular Gyrus	brain
18	chr1:229004000-229008000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:229004200-229006200	Weak transcription	Placenta	Placenta
20	chr1:229004200-229012400	Weak transcription	Spleen	Spleen
21	chr1:229004400-229007000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:229004400-229007600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:229004400-229015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:229004600-229005600	Weak transcription	HepG2	liver
25	chr1:229004600-229007600	Weak transcription	Fetal Intestine Small	intestine
26	chr1:229004600-229007800	Weak transcription	Fetal Intestine Large	intestine
27	chr1:229005000-229007200	Weak transcription	Fetal Thymus	thymus
28	chr1:229005200-229005600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:229005200-229005600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:229005200-229006000	Weak transcription	Brain Anterior Caudate	brain
31	chr1:229005400-229006400	Enhancers	Fetal Muscle Trunk	muscle
32	chr1:229005400-229007200	Weak transcription	Fetal Brain Male	brain

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