Variant report

Variant	rs61838860
Chromosome Location	chr10:50003538-50003539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50002726..50004713-chr10:50008514..50011294,2	K562	blood:
2	chr10:49998728..50000919-chr10:50001573..50004326,2	K562	blood:
3	chr10:50001268..50003610-chr10:50006671..50009349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10857638	0.81[AMR][1000 genomes]
rs10857639	0.81[AMR][1000 genomes]
rs10857645	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10857648	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10857649	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11101475	0.81[AMR][1000 genomes]
rs11101487	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11101488	0.87[EUR][1000 genomes]
rs11101499	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11101505	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11815762	0.81[AMR][1000 genomes]
rs11816499	0.81[AMR][1000 genomes]
rs11816771	0.81[AMR][1000 genomes]
rs12257841	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12267050	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2940706	0.87[EUR][1000 genomes]
rs41282003	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838440	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838861	0.87[EUR][1000 genomes]
rs61838862	0.87[EUR][1000 genomes]
rs61838863	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
3	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
5	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:49999200-50005600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:49999200-50006200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50000000-50008400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:50000400-50008400	Weak transcription	Colonic Mucosa	Colon
11	chr10:50001000-50003800	Weak transcription	Lung	lung
12	chr10:50001000-50008200	Weak transcription	Fetal Thymus	thymus
13	chr10:50001000-50012800	Weak transcription	Right Ventricle	heart
14	chr10:50001200-50005600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:50001200-50009400	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:50001400-50007600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:50001600-50008200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:50002200-50003800	Weak transcription	GM12878-XiMat	blood
19	chr10:50002600-50008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:50002800-50008400	Weak transcription	Liver	Liver
21	chr10:50003000-50003800	Weak transcription	Spleen	Spleen
22	chr10:50003000-50008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:50003000-50008400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:50003000-50009400	Weak transcription	Left Ventricle	heart
25	chr10:50003200-50006800	Weak transcription	NHEK	skin
26	chr10:50003200-50008400	Weak transcription	HMEC	breast
27	chr10:50003400-50006800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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