Variant report

Variant	rs11816499
Chromosome Location	chr10:49995364-49995365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10857636	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10857637	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10857638	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10857639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857645	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10857648	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10857649	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11101447	1.00[CEU][hapmap]
rs11101463	1.00[CEU][hapmap]
rs11101475	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11101487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11101488	0.91[EUR][1000 genomes]
rs11101499	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11101505	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11815762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257841	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12267050	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1871604	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2199846	1.00[CEU][hapmap]
rs2683611	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2940706	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs41282003	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61838440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61838860	0.81[AMR][1000 genomes]
rs61838861	0.91[EUR][1000 genomes]
rs61838862	0.91[EUR][1000 genomes]
rs61838863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7075745	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
5	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
8	chr10:49990600-49999000	Weak transcription	Lung	lung
9	chr10:49991000-49996600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49992600-49999800	Weak transcription	Small Intestine	intestine
11	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood
13	chr10:49993600-50001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49994600-49995400	Weak transcription	Fetal Stomach	stomach
16	chr10:49994600-49995800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:49994600-49995800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr10:49994600-49996600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:49995200-49995600	Enhancers	Fetal Lung	lung

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