Variant report

Variant	rs2683611
Chromosome Location	chr10:49983172-49983173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10857636	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10857637	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10857638	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10857639	0.91[EUR][1000 genomes]
rs10857645	0.82[EUR][1000 genomes]
rs10857648	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10857649	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11101447	1.00[CEU][hapmap]
rs11101463	1.00[CEU][hapmap]
rs11101475	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11101487	0.82[EUR][1000 genomes]
rs11101488	0.82[EUR][1000 genomes]
rs11101499	0.82[EUR][1000 genomes]
rs11101505	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11815762	0.91[EUR][1000 genomes]
rs11816499	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11816771	0.91[EUR][1000 genomes]
rs12257841	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12267050	0.82[EUR][1000 genomes]
rs1871604	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2199846	1.00[CEU][hapmap]
rs2940706	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs41282003	0.82[EUR][1000 genomes]
rs61838440	0.82[EUR][1000 genomes]
rs61838861	0.82[EUR][1000 genomes]
rs61838862	0.82[EUR][1000 genomes]
rs61838863	0.82[EUR][1000 genomes]
rs6537576	0.91[LWK][hapmap];0.85[YRI][hapmap]
rs7075745	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49977000-49990400	Weak transcription	Fetal Brain Male	brain
5	chr10:49979200-49984600	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:49979400-49989200	Strong transcription	Primary hematopoietic stem cells	blood
7	chr10:49979600-49990600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:49979800-49991000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:49979800-49992400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:49980000-49990400	Weak transcription	Right Atrium	heart
11	chr10:49981200-49991000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
13	chr10:49981800-49989000	Strong transcription	GM12878-XiMat	blood
14	chr10:49982000-49992200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:49982400-49991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
17	chr10:49982600-49983400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:49982600-49983600	Enhancers	Right Ventricle	heart
19	chr10:49982600-49988800	Strong transcription	Spleen	Spleen
20	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:49982800-49983200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:49982800-49983200	Enhancers	Brain Germinal Matrix	brain
23	chr10:49983000-49983200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:49983000-49984400	Enhancers	Fetal Stomach	stomach
25	chr10:49983000-49986000	Weak transcription	Lung	lung

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