Variant report

Variant	rs11101487
Chromosome Location	chr10:50001718-50001719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50000394..50002013-chr10:50005328..50007028,2	MCF-7	breast:
2	chr10:49986976..49988548-chr10:50000055..50002559,2	MCF-7	breast:
3	chr10:49998728..50000919-chr10:50001573..50004326,2	K562	blood:
4	chr10:49995916..49998699-chr10:49999856..50002398,4	K562	blood:
5	chr10:50000720..50003091-chr10:50019887..50021986,2	MCF-7	breast:
6	chr10:49998728..50000670-chr10:50000841..50003073,2	K562	blood:
7	chr10:50001590..50003527-chr10:50010221..50013133,2	MCF-7	breast:
8	chr10:50001268..50003610-chr10:50006671..50009349,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10857636	0.86[EUR][1000 genomes]
rs10857637	0.86[EUR][1000 genomes]
rs10857638	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10857639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10857645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101475	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11101488	1.00[EUR][1000 genomes]
rs11101499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815762	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816771	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12257841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871604	0.82[EUR][1000 genomes]
rs2683611	0.82[EUR][1000 genomes]
rs2940706	1.00[EUR][1000 genomes]
rs41282003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838860	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838861	1.00[EUR][1000 genomes]
rs61838862	1.00[EUR][1000 genomes]
rs61838863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
3	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
5	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood
6	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:49999200-50005600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:49999200-50006200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:49999400-50003400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:49999600-50003000	Enhancers	Left Ventricle	heart
12	chr10:49999800-50003000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:49999800-50003200	Enhancers	HMEC	breast
14	chr10:50000000-50003000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:50000000-50003200	Enhancers	NHEK	skin
16	chr10:50000000-50008400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:50000400-50008400	Weak transcription	Colonic Mucosa	Colon
18	chr10:50000600-50002200	Weak transcription	Spleen	Spleen
19	chr10:50000800-50002000	Enhancers	Primary T cells from cord blood	blood
20	chr10:50001000-50003800	Weak transcription	Lung	lung
21	chr10:50001000-50008200	Weak transcription	Fetal Thymus	thymus
22	chr10:50001000-50012800	Weak transcription	Right Ventricle	heart
23	chr10:50001200-50002200	Weak transcription	Esophagus	oesophagus
24	chr10:50001200-50005600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:50001200-50009400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:50001400-50007600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:50001600-50008200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links