Variant report

Variant	rs61856523
Chromosome Location	chr10:44451648-44451649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61856518	0.87[EUR][1000 genomes]
rs61856524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61856544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61856545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61856546	0.89[EUR][1000 genomes]
rs61856547	0.89[EUR][1000 genomes]
rs61856549	0.89[EUR][1000 genomes]
rs61856552	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44450600-44453600	Weak transcription	Left Ventricle	heart
3	chr10:44450800-44455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44451000-44452800	Weak transcription	Fetal Heart	heart
5	chr10:44451600-44451800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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