Variant report

Variant	rs61856549
Chromosome Location	chr10:44505718-44505719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61856518	1.00[AMR][1000 genomes]
rs61856523	0.89[EUR][1000 genomes]
rs61856524	0.89[EUR][1000 genomes]
rs61856544	0.89[EUR][1000 genomes]
rs61856545	0.89[EUR][1000 genomes]
rs61856546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61856547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61856552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44501000-44508400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44502200-44506800	Enhancers	Adipose Nuclei	Adipose
4	chr10:44502200-44507400	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44502400-44506600	Enhancers	GM12878-XiMat	blood
6	chr10:44502600-44506200	Weak transcription	Fetal Brain Female	brain
7	chr10:44502600-44507800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:44503200-44506400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:44503400-44507400	Enhancers	HUVEC	blood vessel
10	chr10:44503800-44507200	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:44503800-44507400	Enhancers	Left Ventricle	heart
12	chr10:44504000-44513000	Weak transcription	Lung	lung
13	chr10:44504200-44506800	Enhancers	Osteobl	bone
14	chr10:44504400-44508000	Enhancers	Fetal Brain Male	brain
15	chr10:44504600-44506200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:44504800-44508200	Weak transcription	Spleen	Spleen
17	chr10:44504800-44509000	Enhancers	Ovary	ovary
18	chr10:44505000-44506600	Enhancers	Aorta	Aorta
19	chr10:44505200-44506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:44505200-44506600	Enhancers	Fetal Heart	heart
21	chr10:44505200-44506800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:44505400-44505800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:44505400-44505800	Enhancers	Pancreas	Pancrea
24	chr10:44505400-44507600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:44505600-44506000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:44505600-44506000	Weak transcription	Psoas Muscle	Psoas
27	chr10:44505600-44506000	Weak transcription	Right Atrium	heart
28	chr10:44505600-44506200	Weak transcription	Right Ventricle	heart
29	chr10:44505600-44507400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:44505600-44512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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