Variant report

Variant	rs61863283
Chromosome Location	chr10:99351254-99351255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99342912..99345937-chr10:99348140..99351473,3	K562	blood:
2	chr10:99257383..99259278-chr10:99348125..99351802,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241935	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000249967	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11817730	0.89[ASN][1000 genomes]
rs1977790	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2861970	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068278	0.89[ASN][1000 genomes]
rs7093643	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093840	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913812	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv975816	chr10:99344579-99354694	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99345400-99353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99346400-99352600	Weak transcription	Aorta	Aorta
3	chr10:99347000-99353400	Weak transcription	Right Atrium	heart
4	chr10:99347200-99355400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:99349400-99351800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:99349600-99351600	Enhancers	Fetal Intestine Large	intestine
7	chr10:99349600-99352600	Weak transcription	Left Ventricle	heart
8	chr10:99349600-99370800	Weak transcription	Fetal Stomach	stomach
9	chr10:99350000-99355200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:99350200-99351600	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:99350400-99351800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99350600-99351400	Enhancers	Fetal Thymus	thymus
13	chr10:99350600-99360600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:99350800-99351600	Enhancers	Fetal Intestine Small	intestine
15	chr10:99350800-99355400	Weak transcription	Liver	Liver
16	chr10:99350800-99355600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:99350800-99356000	Weak transcription	Right Ventricle	heart
18	chr10:99350800-99361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:99351000-99351400	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:99351000-99353400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:99351000-99355400	Weak transcription	HepG2	liver
22	chr10:99351000-99355800	Weak transcription	Fetal Heart	heart
23	chr10:99351000-99356000	Weak transcription	Pancreas	Pancrea

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