Variant report

Variant	rs7068278
Chromosome Location	chr10:99357142-99357143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr10:99355578-99357190	HCT-116	colon:	n/a	chr10:99355937-99355945 chr10:99355935-99355942 chr10:99355935-99355947

No.	Distal block	Cell Line	Cell type
1	chr10:99351412..99353396-chr10:99355023..99357817,2	K562	blood:
2	chr10:99341781..99343970-chr10:99356673..99358698,2	MCF-7	breast:
3	chr10:99256797..99259240-chr10:99356663..99359169,2	MCF-7	breast:
4	chr10:99355507..99358331-chr10:99358774..99361735,2	K562	blood:

Variant related genes	Relation type
HOGA1	TF binding region
ENSG00000155229	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11817730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977790	0.90[ASN][1000 genomes]
rs2297644	0.87[CEU][hapmap]
rs2861970	0.90[ASN][1000 genomes]
rs61863283	0.89[ASN][1000 genomes]
rs7078003	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7093643	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7093840	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7897051	0.88[CHB][hapmap]
rs7897232	0.86[CHB][hapmap]
rs7913812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99349600-99370800	Weak transcription	Fetal Stomach	stomach
2	chr10:99350600-99360600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:99350800-99361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:99351600-99375600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:99354800-99358800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:99355400-99357800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:99355400-99357800	Enhancers	NHDF-Ad	bronchial
8	chr10:99355400-99357800	Enhancers	NHLF	lung
9	chr10:99355400-99359000	Enhancers	NHEK	skin
10	chr10:99355600-99357400	Enhancers	HSMM	muscle
11	chr10:99355600-99357800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:99355600-99358000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:99355600-99358000	Enhancers	HMEC	breast
14	chr10:99355800-99357400	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:99355800-99357600	Enhancers	Fetal Heart	heart
16	chr10:99355800-99358000	Enhancers	K562	blood
17	chr10:99356000-99358000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:99356000-99358200	Enhancers	Hela-S3	cervix
19	chr10:99356200-99357400	Weak transcription	Left Ventricle	heart
20	chr10:99356400-99357400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:99356400-99357400	Weak transcription	Lung	lung
22	chr10:99356400-99357400	Weak transcription	Psoas Muscle	Psoas
23	chr10:99356400-99357400	Weak transcription	Right Atrium	heart
24	chr10:99356400-99357800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:99356400-99358200	Weak transcription	Liver	Liver
26	chr10:99356400-99358600	Weak transcription	Pancreas	Pancrea
27	chr10:99356400-99358800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:99356400-99360400	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:99356400-99360800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:99356400-99361400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:99356400-99361600	Weak transcription	Aorta	Aorta
32	chr10:99356400-99373800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:99356600-99358200	Enhancers	HepG2	liver
34	chr10:99356600-99361200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:99356800-99357800	Enhancers	NH-A	brain
36	chr10:99356800-99358000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:99356800-99358000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:99356800-99358200	Enhancers	HUVEC	blood vessel
39	chr10:99356800-99358400	Enhancers	A549	lung
40	chr10:99356800-99366200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:99357000-99357400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:99357000-99357600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:99357000-99357600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:99357000-99357800	Enhancers	Osteobl	bone
45	chr10:99357000-99358000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:99357000-99358400	Enhancers	Right Ventricle	heart
47	chr10:99357000-99359600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:99357000-99366200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links