Variant report

Variant	rs7093840
Chromosome Location	chr10:99350017-99350018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99342912..99345937-chr10:99348140..99351473,3	K562	blood:
2	chr10:99257383..99259278-chr10:99348125..99351802,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000249967	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11817730	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1977790	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861970	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61863283	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7068278	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7093643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897051	0.88[CHB][hapmap]
rs7897232	0.86[CHB][hapmap]
rs7913812	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv975816	chr10:99344579-99354694	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99345400-99353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99346200-99351000	Enhancers	HepG2	liver
3	chr10:99346400-99352600	Weak transcription	Aorta	Aorta
4	chr10:99347000-99350200	Weak transcription	Right Ventricle	heart
5	chr10:99347000-99353400	Weak transcription	Right Atrium	heart
6	chr10:99347200-99355400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:99348000-99350600	Enhancers	Brain Hippocampus Middle	brain
8	chr10:99348400-99350400	Enhancers	Brain Substantia Nigra	brain
9	chr10:99348600-99350400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:99349000-99350200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:99349000-99351000	Enhancers	Pancreas	Pancrea
12	chr10:99349200-99350200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:99349400-99351800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:99349600-99350800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:99349600-99351600	Enhancers	Fetal Intestine Large	intestine
16	chr10:99349600-99352600	Weak transcription	Left Ventricle	heart
17	chr10:99349600-99370800	Weak transcription	Fetal Stomach	stomach
18	chr10:99349800-99350200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:99349800-99350400	Weak transcription	Liver	Liver
20	chr10:99349800-99350800	Genic enhancers	Fetal Intestine Small	intestine
21	chr10:99349800-99351000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:99350000-99350200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr10:99350000-99350400	Weak transcription	Fetal Heart	heart
24	chr10:99350000-99350600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:99350000-99355200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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