Variant report

Variant	rs61867861
Chromosome Location	chr10:116261598-116261599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116259184..116261676-chr10:116284926..116286674,2	MCF-7	breast:
2	chr10:116260217..116261797-chr10:116580034..116582863,2	MCF-7	breast:
3	chr10:116255855..116258207-chr10:116259480..116261802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11196757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12217279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61867862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61870097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61870098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61870100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61870101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
4	chr10:116225600-116278800	Weak transcription	HSMM	muscle
5	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
6	chr10:116249600-116264800	Weak transcription	Pancreas	Pancrea
7	chr10:116250200-116264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:116250200-116265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:116252000-116267200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:116252200-116264800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:116252400-116263800	Weak transcription	Hela-S3	cervix
12	chr10:116252600-116262800	Weak transcription	Psoas Muscle	Psoas
13	chr10:116252600-116264800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:116252600-116264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116252600-116264800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:116253200-116264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:116253200-116264800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:116255400-116263000	Weak transcription	Fetal Lung	lung
19	chr10:116255400-116264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:116255400-116264600	Weak transcription	Fetal Kidney	kidney
21	chr10:116255800-116262600	Weak transcription	Fetal Heart	heart
22	chr10:116256000-116264600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:116256800-116263600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:116256800-116264600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:116256800-116264800	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:116258000-116261800	Enhancers	Small Intestine	intestine
27	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
28	chr10:116258200-116263200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr10:116258800-116263200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:116259000-116263000	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:116259400-116261600	Weak transcription	HUVEC	blood vessel
32	chr10:116259400-116263200	Enhancers	Primary B cells from peripheral blood	blood
33	chr10:116259400-116263200	Enhancers	Ovary	ovary
34	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:116259800-116261800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:116259800-116262000	Enhancers	Primary B cells from cord blood	blood
37	chr10:116259800-116263000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:116259800-116263400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:116259800-116264000	Weak transcription	HSMMtube	muscle
40	chr10:116259800-116264800	Weak transcription	Brain Anterior Caudate	brain
41	chr10:116259800-116267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:116259800-116267200	Weak transcription	Lung	lung
43	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
44	chr10:116260000-116261800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:116260000-116261800	Weak transcription	Right Ventricle	heart
46	chr10:116260000-116262600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:116260000-116262800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:116260000-116264400	Weak transcription	Adipose Nuclei	Adipose
49	chr10:116260000-116264800	Weak transcription	Liver	Liver
50	chr10:116260000-116267200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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