Variant report

Variant	rs61870100
Chromosome Location	chr10:116249103-116249104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr10:116248934-116249775	HepG2	liver:	n/a	chr10:116249388-116249400 chr10:116249385-116249401 chr10:116249335-116249350
2	FOXA1	chr10:116249003-116249814	HepG2	liver:	n/a	chr10:116249274-116249286 chr10:116249270-116249282
3	TCF7L2	chr10:116249027-116249907	HepG2	liver:	n/a	n/a
4	NR2F2	chr10:116248963-116250055	HepG2	liver:	n/a	n/a
5	NR2F2	chr10:116249021-116249862	HepG2	liver:	n/a	n/a
6	EP300	chr10:116249073-116249815	HepG2	liver:	n/a	chr10:116249269-116249279
7	HDAC2	chr10:116249102-116249852	HepG2	liver:	n/a	n/a
8	TEAD4	chr10:116248821-116250063	HepG2	liver:	n/a	chr10:116249510-116249519
9	MBD4	chr10:116249080-116249725	HepG2	liver:	n/a	n/a
10	SP1	chr10:116249076-116249815	HepG2	liver:	n/a	n/a
11	ARID3A	chr10:116248990-116249888	HepG2	liver:	n/a	n/a
12	EP300	chr10:116248842-116250014	HepG2	liver:	n/a	chr10:116249269-116249279
13	TEAD4	chr10:116249091-116249866	ECC-1	luminal epithelium:	n/a	chr10:116249510-116249519
14	MYBL2	chr10:116248856-116249980	HepG2	liver:	n/a	n/a
15	NFIC	chr10:116248916-116249866	HepG2	liver:	n/a	n/a
16	MYBL2	chr10:116248892-116249869	HepG2	liver:	n/a	n/a
17	FOXA1	chr10:116248952-116249825	HepG2	liver:	n/a	chr10:116249274-116249286 chr10:116249270-116249282

Variant related genes	Relation type
ABLIM1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11196757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11196759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11196760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11196762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11196765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11196767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12217279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61867861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61867862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61870097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61870098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61870101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
2	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:116218400-116249200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
7	chr10:116225600-116278800	Weak transcription	HSMM	muscle
8	chr10:116231200-116251600	Weak transcription	GM12878-XiMat	blood
9	chr10:116231800-116249200	Weak transcription	Pancreas	Pancrea
10	chr10:116238200-116251400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:116238400-116251600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:116238600-116249200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:116239400-116249200	Weak transcription	Stomach Mucosa	stomach
14	chr10:116239400-116249400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:116240600-116250400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:116241800-116251600	Strong transcription	HSMMtube	muscle
17	chr10:116242400-116250000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
19	chr10:116243200-116249200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:116243400-116251200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:116243400-116251600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr10:116243800-116249200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:116243800-116252000	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:116244000-116249400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:116244000-116249600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:116245000-116249400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:116245000-116249400	Weak transcription	Gastric	stomach
28	chr10:116245000-116258800	Weak transcription	Colonic Mucosa	Colon
29	chr10:116245200-116249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:116245200-116249200	Weak transcription	Fetal Stomach	stomach
31	chr10:116245200-116249400	Weak transcription	Psoas Muscle	Psoas
32	chr10:116245400-116251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:116245800-116249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:116245800-116249400	Weak transcription	Fetal Lung	lung
35	chr10:116245800-116249400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:116246000-116249200	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:116246000-116249400	Weak transcription	Fetal Brain Male	brain
38	chr10:116246000-116250400	Strong transcription	Primary B cells from cord blood	blood
39	chr10:116246200-116249400	Weak transcription	Brain Anterior Caudate	brain
40	chr10:116246400-116249200	Weak transcription	Ovary	ovary
41	chr10:116246800-116249200	Weak transcription	Brain Substantia Nigra	brain
42	chr10:116246800-116250000	Enhancers	HMEC	breast
43	chr10:116246800-116251200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:116246800-116252000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:116247000-116251200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:116247000-116255200	Weak transcription	Fetal Kidney	kidney
47	chr10:116247200-116249200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:116247200-116249400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:116247200-116250200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:116247600-116251400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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