Variant report

Variant	rs61872460
Chromosome Location	chr10:91575315-91575316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10785901	0.80[EUR][1000 genomes]
rs10785907	0.84[EUR][1000 genomes]
rs10881632	0.80[EUR][1000 genomes]
rs10881666	0.81[EUR][1000 genomes]
rs10881667	0.81[EUR][1000 genomes]
rs10881668	0.81[EUR][1000 genomes]
rs10881669	0.81[EUR][1000 genomes]
rs10881670	0.81[EUR][1000 genomes]
rs10881678	0.81[EUR][1000 genomes]
rs10982	0.81[EUR][1000 genomes]
rs11185867	0.82[EUR][1000 genomes]
rs11185878	0.81[EUR][1000 genomes]
rs11185879	0.83[EUR][1000 genomes]
rs11185880	0.81[EUR][1000 genomes]
rs11185881	0.81[EUR][1000 genomes]
rs11185884	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11185886	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11185888	0.81[EUR][1000 genomes]
rs11185889	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185890	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185892	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11813214	0.81[EUR][1000 genomes]
rs12243552	0.81[EUR][1000 genomes]
rs12253793	0.81[EUR][1000 genomes]
rs12254296	0.81[EUR][1000 genomes]
rs12264026	0.81[EUR][1000 genomes]
rs12763178	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12767644	0.82[EUR][1000 genomes]
rs12773740	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12776628	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12948	0.81[EUR][1000 genomes]
rs1555868	0.80[EUR][1000 genomes]
rs34089128	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35754486	0.83[EUR][1000 genomes]
rs4126596	0.81[EUR][1000 genomes]
rs7074093	0.84[EUR][1000 genomes]
rs7081362	0.81[EUR][1000 genomes]
rs7095702	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7096826	0.85[EUR][1000 genomes]
rs735936	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7896461	0.81[EUR][1000 genomes]
rs7914590	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7919866	0.81[EUR][1000 genomes]
rs7921817	0.81[EUR][1000 genomes]
rs8181406	0.84[EUR][1000 genomes]
rs913033	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs61872460	LINC00865	cis	lung	GTEx
rs61872460	RP11-248C1.3	cis	Adipose Subcutaneous	GTEx
rs61872460	RP11-248C1.3	cis	Artery Tibial	GTEx
rs61872460	LINC00865	cis	Artery Tibial	GTEx
rs61872460	LINC00865	cis	Adipose Subcutaneous	GTEx
rs61872460	LINC00865	cis	Nerve Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91574200-91576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:91575200-91576400	Enhancers	HepG2	liver

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