Variant report

Variant	rs11185884
Chromosome Location	chr10:91555226-91555227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 203 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10082422	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10430622	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10430645	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10430646	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10430647	0.81[EUR][1000 genomes]
rs1048057	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs10509579	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1062465	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs10748527	0.82[EUR][1000 genomes]
rs10785896	0.94[CEU][hapmap]
rs10785899	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10785901	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10785902	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10785904	0.82[EUR][1000 genomes]
rs10785907	0.84[EUR][1000 genomes]
rs10881614	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs10881618	0.94[CEU][hapmap];0.92[TSI][hapmap]
rs10881619	0.94[CEU][hapmap]
rs10881626	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10881628	1.00[CEU][hapmap]
rs10881629	1.00[CEU][hapmap]
rs10881630	0.81[EUR][1000 genomes]
rs10881631	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10881632	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10881633	0.81[EUR][1000 genomes]
rs10881634	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881635	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881636	0.81[EUR][1000 genomes]
rs10881637	0.81[EUR][1000 genomes]
rs10881638	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881639	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881640	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881643	0.81[EUR][1000 genomes]
rs10881644	0.81[EUR][1000 genomes]
rs10881646	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881647	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10881648	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10881649	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881650	0.82[AMR][1000 genomes]
rs10881651	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881654	0.82[EUR][1000 genomes]
rs10881655	0.82[EUR][1000 genomes]
rs10881656	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881658	0.82[EUR][1000 genomes]
rs10881659	0.82[EUR][1000 genomes]
rs10881660	0.82[EUR][1000 genomes]
rs10881662	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881664	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881665	0.82[EUR][1000 genomes]
rs10881666	1.00[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs10881667	0.84[EUR][1000 genomes]
rs10881668	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881669	0.84[EUR][1000 genomes]
rs10881670	0.84[EUR][1000 genomes]
rs10881673	0.82[EUR][1000 genomes]
rs10881674	0.82[EUR][1000 genomes]
rs10881675	0.82[EUR][1000 genomes]
rs10881677	0.82[EUR][1000 genomes]
rs10881678	0.81[EUR][1000 genomes]
rs10982	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185825	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap]
rs11185851	0.81[EUR][1000 genomes]
rs11185852	0.81[EUR][1000 genomes]
rs11185853	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11185855	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11185858	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11185861	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11185864	0.81[EUR][1000 genomes]
rs11185867	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185870	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11185878	0.84[EUR][1000 genomes]
rs11185879	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11185880	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11185881	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185882	0.82[EUR][1000 genomes]
rs11185886	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185888	0.81[EUR][1000 genomes]
rs11185889	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11185890	0.85[EUR][1000 genomes]
rs11185892	0.94[EUR][1000 genomes]
rs1126480	0.82[EUR][1000 genomes]
rs11813204	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11813214	0.84[EUR][1000 genomes]
rs11816741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12243552	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12247868	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12248156	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12249500	0.82[EUR][1000 genomes]
rs12250365	1.00[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs12253793	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12254296	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12256229	0.82[AMR][1000 genomes]
rs12264026	0.84[EUR][1000 genomes]
rs12264044	0.82[EUR][1000 genomes]
rs12763178	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12767644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12773740	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12773865	0.82[ASN][1000 genomes]
rs12776628	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12948	0.84[EUR][1000 genomes]
rs1324699	0.82[EUR][1000 genomes]
rs1324700	0.82[EUR][1000 genomes]
rs1409318	0.82[EUR][1000 genomes]
rs1409319	0.82[EUR][1000 genomes]
rs1409358	0.94[CEU][hapmap];0.96[TSI][hapmap]
rs1555868	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17125278	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1886997	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1886998	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1998644	0.82[EUR][1000 genomes]
rs1998645	0.82[EUR][1000 genomes]
rs2017527	0.82[EUR][1000 genomes]
rs2026549	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2026550	1.00[CEU][hapmap]
rs2026551	0.82[EUR][1000 genomes]
rs2077946	0.93[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs2182396	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2418928	0.80[EUR][1000 genomes]
rs2419057	0.82[EUR][1000 genomes]
rs2419085	0.82[EUR][1000 genomes]
rs2900802	0.82[EUR][1000 genomes]
rs2900813	0.82[EUR][1000 genomes]
rs34089128	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754486	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35929113	0.81[EUR][1000 genomes]
rs36190073	0.83[AMR][1000 genomes]
rs3740036	0.82[EUR][1000 genomes]
rs3740037	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3758384	0.81[EUR][1000 genomes]
rs3758385	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3758389	0.81[EUR][1000 genomes]
rs3824609	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs4126596	0.84[EUR][1000 genomes]
rs4934498	0.82[EUR][1000 genomes]
rs4934501	0.82[EUR][1000 genomes]
rs4934502	0.82[EUR][1000 genomes]
rs4934503	0.82[EUR][1000 genomes]
rs56664691	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61481124	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61870788	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61872460	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6586217	0.81[EUR][1000 genomes]
rs6586218	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7070916	0.82[ASN][1000 genomes]
rs7074093	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7074112	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7074290	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076259	0.94[CEU][hapmap];0.96[TSI][hapmap]
rs7077349	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs7081362	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7083066	0.82[EUR][1000 genomes]
rs7085805	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7087240	0.94[CEU][hapmap]
rs7087738	0.82[EUR][1000 genomes]
rs7087789	0.94[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap]
rs7088104	0.94[CEU][hapmap]
rs7089108	0.81[EUR][1000 genomes]
rs7089326	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7089473	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7090618	0.80[EUR][1000 genomes]
rs7092444	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7095702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7095818	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7096466	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs7096826	0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097496	0.94[CEU][hapmap]
rs7100603	0.94[CEU][hapmap];0.96[TSI][hapmap]
rs7100756	0.82[EUR][1000 genomes]
rs716781	0.94[CEU][hapmap]
rs727427	0.94[CEU][hapmap]
rs735936	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7893678	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7895001	0.81[EUR][1000 genomes]
rs7895379	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7896461	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7898670	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7899264	0.81[EUR][1000 genomes]
rs7901438	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7902655	0.81[EUR][1000 genomes]
rs7904847	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7906112	0.81[EUR][1000 genomes]
rs7907852	0.94[CEU][hapmap];0.92[TSI][hapmap]
rs7909550	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7910001	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7912347	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7912464	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7913109	0.82[EUR][1000 genomes]
rs7914590	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919866	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7921817	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7924196	0.82[EUR][1000 genomes]
rs8181361	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8181406	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs913033	0.81[EUR][1000 genomes]
rs9325443	0.94[CEU][hapmap];0.96[TSI][hapmap]
rs9325444	0.94[CEU][hapmap]
rs962524	1.00[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs9663129	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9665314	0.82[EUR][1000 genomes]
rs980520	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11185884	IFIT1	cis	cerebellum	SCAN
rs11185884	KIF20B	cis	cerebellum	SCAN
rs11185884	LINC00865	cis	Artery Tibial	GTEx
rs11185884	LINC00865	cis	Nerve Tibial	GTEx
rs11185884	KIF20B	cis	parietal	SCAN
rs11185884	RP11-248C1.3	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91541400-91560000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:91553800-91555800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:91553800-91555800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:91554000-91555400	Enhancers	HMEC	breast
5	chr10:91554000-91555600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:91554000-91555800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:91554000-91555800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:91554000-91555800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:91554000-91556200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:91554200-91555400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:91554200-91555400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:91554200-91555600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr10:91554200-91556000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:91554200-91556000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:91554400-91555800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:91554800-91555400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:91555200-91555400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:91555200-91556200	Weak transcription	HepG2	liver

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