Variant report

Variant	rs12773865
Chromosome Location	chr10:91454628-91454629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91452973..91455330-chr10:91459934..91462307,2	K562	blood:
2	chr10:91447332..91449310-chr10:91453749..91456136,2	K562	blood:
3	chr10:91452372..91455010-chr10:91457256..91459357,2	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction
ENSG00000240996	Chromatin interaction

Extended variants
information (count: 158 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10082422	0.84[EUR][1000 genomes]
rs10430622	0.82[EUR][1000 genomes]
rs10430645	0.82[EUR][1000 genomes]
rs10430646	0.82[EUR][1000 genomes]
rs10430647	0.82[EUR][1000 genomes]
rs10509579	0.82[EUR][1000 genomes]
rs1062465	0.82[EUR][1000 genomes]
rs10785893	0.91[EUR][1000 genomes]
rs10785894	0.91[EUR][1000 genomes]
rs10785895	0.91[EUR][1000 genomes]
rs10785896	0.91[EUR][1000 genomes]
rs10785899	0.84[EUR][1000 genomes]
rs10785902	0.80[EUR][1000 genomes]
rs10881615	0.91[EUR][1000 genomes]
rs10881616	0.91[EUR][1000 genomes]
rs10881617	0.88[EUR][1000 genomes]
rs10881618	0.91[EUR][1000 genomes]
rs10881619	0.91[EUR][1000 genomes]
rs10881621	0.91[EUR][1000 genomes]
rs10881623	0.91[EUR][1000 genomes]
rs10881626	0.84[EUR][1000 genomes]
rs10881627	0.82[EUR][1000 genomes]
rs10881628	0.83[EUR][1000 genomes]
rs10881629	0.80[EUR][1000 genomes]
rs10881630	0.82[EUR][1000 genomes]
rs10881631	0.82[EUR][1000 genomes]
rs10881632	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881633	0.82[EUR][1000 genomes]
rs10881634	0.82[EUR][1000 genomes]
rs10881635	0.82[EUR][1000 genomes]
rs10881636	0.82[EUR][1000 genomes]
rs10881637	0.82[EUR][1000 genomes]
rs10881638	0.82[EUR][1000 genomes]
rs10881639	0.82[EUR][1000 genomes]
rs10881640	0.82[EUR][1000 genomes]
rs10881643	0.82[EUR][1000 genomes]
rs10881644	0.82[EUR][1000 genomes]
rs10881646	0.82[EUR][1000 genomes]
rs10881647	0.82[EUR][1000 genomes]
rs10881649	0.80[EUR][1000 genomes]
rs10881651	0.80[EUR][1000 genomes]
rs10881653	0.81[EUR][1000 genomes]
rs10881654	0.80[EUR][1000 genomes]
rs10881655	0.80[EUR][1000 genomes]
rs10881656	0.80[EUR][1000 genomes]
rs10881657	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881658	0.80[EUR][1000 genomes]
rs10881659	0.80[EUR][1000 genomes]
rs10881660	0.80[EUR][1000 genomes]
rs10881662	0.80[EUR][1000 genomes]
rs10881664	0.80[EUR][1000 genomes]
rs10881665	0.80[EUR][1000 genomes]
rs11185825	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185826	0.80[EUR][1000 genomes]
rs11185830	0.91[EUR][1000 genomes]
rs11185831	0.90[EUR][1000 genomes]
rs11185833	0.91[EUR][1000 genomes]
rs11185851	0.82[EUR][1000 genomes]
rs11185852	0.82[EUR][1000 genomes]
rs11185853	0.82[EUR][1000 genomes]
rs11185855	0.82[EUR][1000 genomes]
rs11185858	0.82[EUR][1000 genomes]
rs11185861	0.82[EUR][1000 genomes]
rs11185864	0.82[EUR][1000 genomes]
rs11185867	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11185870	0.80[EUR][1000 genomes]
rs11185879	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185884	0.82[ASN][1000 genomes]
rs11185886	0.83[ASN][1000 genomes]
rs1126480	0.80[EUR][1000 genomes]
rs11813204	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814174	0.91[AFR][1000 genomes]
rs11816741	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12247868	0.80[EUR][1000 genomes]
rs12248156	0.82[EUR][1000 genomes]
rs12249500	0.80[EUR][1000 genomes]
rs12763178	0.83[ASN][1000 genomes]
rs12767644	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12773740	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12779880	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409358	0.91[EUR][1000 genomes]
rs17125278	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886997	0.82[EUR][1000 genomes]
rs1886998	0.82[EUR][1000 genomes]
rs1887037	0.89[EUR][1000 genomes]
rs2017527	0.80[EUR][1000 genomes]
rs2026549	0.80[EUR][1000 genomes]
rs2026550	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2026551	0.80[EUR][1000 genomes]
rs2077946	0.80[EUR][1000 genomes]
rs2094212	0.91[EUR][1000 genomes]
rs2094213	0.91[EUR][1000 genomes]
rs2182396	0.82[EUR][1000 genomes]
rs2418928	0.81[EUR][1000 genomes]
rs34089128	0.82[ASN][1000 genomes]
rs35754486	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35929113	0.82[EUR][1000 genomes]
rs36190073	0.89[ASN][1000 genomes]
rs3740036	0.80[EUR][1000 genomes]
rs3740037	0.80[EUR][1000 genomes]
rs3758384	0.82[EUR][1000 genomes]
rs3758385	0.82[EUR][1000 genomes]
rs3824609	0.80[EUR][1000 genomes]
rs3908479	0.91[EUR][1000 genomes]
rs4558081	0.91[EUR][1000 genomes]
rs56664691	0.80[EUR][1000 genomes]
rs61481124	0.80[EUR][1000 genomes]
rs61870788	0.80[EUR][1000 genomes]
rs6586217	0.82[EUR][1000 genomes]
rs6586218	0.82[EUR][1000 genomes]
rs7070916	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073779	0.91[EUR][1000 genomes]
rs7074093	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074112	0.82[EUR][1000 genomes]
rs7074290	0.82[EUR][1000 genomes]
rs7076259	0.89[EUR][1000 genomes]
rs7077349	0.83[EUR][1000 genomes]
rs7085805	0.82[EUR][1000 genomes]
rs7087240	0.91[EUR][1000 genomes]
rs7087789	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088104	0.91[EUR][1000 genomes]
rs7088570	0.91[EUR][1000 genomes]
rs7089108	0.82[EUR][1000 genomes]
rs7089326	0.82[EUR][1000 genomes]
rs7089473	0.82[EUR][1000 genomes]
rs7090618	0.81[EUR][1000 genomes]
rs7092444	0.80[EUR][1000 genomes]
rs7094633	0.91[EUR][1000 genomes]
rs7095702	0.83[ASN][1000 genomes]
rs7095818	0.80[EUR][1000 genomes]
rs7096466	0.81[EUR][1000 genomes]
rs7096826	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7097496	0.91[EUR][1000 genomes]
rs7100603	0.91[EUR][1000 genomes]
rs716781	0.89[EUR][1000 genomes]
rs7893678	0.82[EUR][1000 genomes]
rs7895001	0.82[EUR][1000 genomes]
rs7895379	0.82[EUR][1000 genomes]
rs7898670	0.80[EUR][1000 genomes]
rs7899264	0.82[EUR][1000 genomes]
rs7901438	0.82[EUR][1000 genomes]
rs7902655	0.82[EUR][1000 genomes]
rs7904847	0.82[EUR][1000 genomes]
rs7906112	0.82[EUR][1000 genomes]
rs7909550	0.82[EUR][1000 genomes]
rs7910001	0.82[EUR][1000 genomes]
rs7912347	0.80[EUR][1000 genomes]
rs7912464	0.80[EUR][1000 genomes]
rs7914590	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181361	0.82[EUR][1000 genomes]
rs8181406	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325443	0.89[EUR][1000 genomes]
rs9325444	0.86[EUR][1000 genomes]
rs943129	0.90[EUR][1000 genomes]
rs962524	0.80[EUR][1000 genomes]
rs9663129	0.82[EUR][1000 genomes]
rs980520	0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12773865	LINC00865	cis	Nerve Tibial	GTEx
rs12773865	LINC00865	cis	Artery Tibial	GTEx
rs12773865	RP11-248C1.3	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91444600-91460800	Weak transcription	Left Ventricle	heart
2	chr10:91444800-91455000	Weak transcription	NHEK	skin
3	chr10:91445200-91460600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:91447200-91459800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:91453000-91460600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:91453400-91459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:91453800-91460800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:91454200-91455200	Weak transcription	Psoas Muscle	Psoas
9	chr10:91454400-91456000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:91454600-91454800	Enhancers	Aorta	Aorta
11	chr10:91454600-91454800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:91454600-91456200	Enhancers	HUES64 Cell Line	embryonic stem cell

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