Variant report

Variant	rs35754486
Chromosome Location	chr10:91541359-91541360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91536847..91538927-chr10:91540439..91542563,2	K562	blood:

Extended variants
information (count: 164 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10082422	0.86[EUR][1000 genomes]
rs10430622	0.87[EUR][1000 genomes]
rs10430645	0.87[EUR][1000 genomes]
rs10430646	0.87[EUR][1000 genomes]
rs10430647	0.87[EUR][1000 genomes]
rs1048057	0.84[EUR][1000 genomes]
rs10509579	0.87[EUR][1000 genomes]
rs1062465	0.87[EUR][1000 genomes]
rs10785899	0.86[EUR][1000 genomes]
rs10785901	0.87[EUR][1000 genomes]
rs10785902	0.88[EUR][1000 genomes]
rs10881626	0.86[EUR][1000 genomes]
rs10881627	0.85[EUR][1000 genomes]
rs10881628	0.86[EUR][1000 genomes]
rs10881629	0.83[EUR][1000 genomes]
rs10881630	0.87[EUR][1000 genomes]
rs10881631	0.87[EUR][1000 genomes]
rs10881632	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881633	0.87[EUR][1000 genomes]
rs10881634	0.87[EUR][1000 genomes]
rs10881635	0.87[EUR][1000 genomes]
rs10881636	0.87[EUR][1000 genomes]
rs10881637	0.87[EUR][1000 genomes]
rs10881638	0.87[EUR][1000 genomes]
rs10881639	0.87[EUR][1000 genomes]
rs10881640	0.87[EUR][1000 genomes]
rs10881643	0.87[EUR][1000 genomes]
rs10881644	0.87[EUR][1000 genomes]
rs10881646	0.87[EUR][1000 genomes]
rs10881647	0.87[EUR][1000 genomes]
rs10881648	0.88[EUR][1000 genomes]
rs10881649	0.88[EUR][1000 genomes]
rs10881650	0.85[EUR][1000 genomes]
rs10881651	0.88[EUR][1000 genomes]
rs10881652	0.86[EUR][1000 genomes]
rs10881653	0.89[EUR][1000 genomes]
rs10881654	0.88[EUR][1000 genomes]
rs10881655	0.88[EUR][1000 genomes]
rs10881656	0.88[EUR][1000 genomes]
rs10881657	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10881658	0.88[EUR][1000 genomes]
rs10881659	0.88[EUR][1000 genomes]
rs10881660	0.88[EUR][1000 genomes]
rs10881662	0.88[EUR][1000 genomes]
rs10881663	0.83[EUR][1000 genomes]
rs10881664	0.88[EUR][1000 genomes]
rs10881665	0.88[EUR][1000 genomes]
rs10881666	0.90[EUR][1000 genomes]
rs10881667	0.90[EUR][1000 genomes]
rs10881668	0.90[EUR][1000 genomes]
rs10881669	0.90[EUR][1000 genomes]
rs10881670	0.90[EUR][1000 genomes]
rs10982	0.90[EUR][1000 genomes]
rs11185825	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11185851	0.87[EUR][1000 genomes]
rs11185852	0.87[EUR][1000 genomes]
rs11185853	0.87[EUR][1000 genomes]
rs11185855	0.87[EUR][1000 genomes]
rs11185858	0.87[EUR][1000 genomes]
rs11185861	0.87[EUR][1000 genomes]
rs11185864	0.87[EUR][1000 genomes]
rs11185867	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11185870	0.88[EUR][1000 genomes]
rs11185878	0.90[EUR][1000 genomes]
rs11185879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185880	0.90[EUR][1000 genomes]
rs11185881	0.90[EUR][1000 genomes]
rs11185884	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11185886	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185889	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11185892	0.81[EUR][1000 genomes]
rs1126480	0.88[EUR][1000 genomes]
rs11813204	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11813214	0.90[EUR][1000 genomes]
rs11816741	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12243552	0.90[EUR][1000 genomes]
rs12247868	0.88[EUR][1000 genomes]
rs12248156	0.87[EUR][1000 genomes]
rs12249500	0.88[EUR][1000 genomes]
rs12250365	0.87[EUR][1000 genomes]
rs12253793	0.90[EUR][1000 genomes]
rs12254296	0.90[EUR][1000 genomes]
rs12256229	0.85[EUR][1000 genomes]
rs12264026	0.90[EUR][1000 genomes]
rs12264044	0.88[EUR][1000 genomes]
rs12763178	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12767644	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12773740	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773865	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12776628	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12779880	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12948	0.90[EUR][1000 genomes]
rs1555868	0.89[EUR][1000 genomes]
rs17125278	0.87[ASN][1000 genomes]
rs1886997	0.87[EUR][1000 genomes]
rs1886998	0.87[EUR][1000 genomes]
rs2017527	0.88[EUR][1000 genomes]
rs2026549	0.88[EUR][1000 genomes]
rs2026550	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2026551	0.88[EUR][1000 genomes]
rs2077946	0.88[EUR][1000 genomes]
rs2182396	0.87[EUR][1000 genomes]
rs2418928	0.86[EUR][1000 genomes]
rs34089128	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35339677	0.83[AFR][1000 genomes]
rs35929113	0.87[EUR][1000 genomes]
rs36190073	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3740036	0.88[EUR][1000 genomes]
rs3740037	0.88[EUR][1000 genomes]
rs3758384	0.87[EUR][1000 genomes]
rs3758385	0.87[EUR][1000 genomes]
rs3758389	0.87[EUR][1000 genomes]
rs3824609	0.88[EUR][1000 genomes]
rs4126596	0.90[EUR][1000 genomes]
rs56664691	0.88[EUR][1000 genomes]
rs61481124	0.88[EUR][1000 genomes]
rs61870788	0.88[EUR][1000 genomes]
rs61872460	0.83[EUR][1000 genomes]
rs6586217	0.87[EUR][1000 genomes]
rs6586218	0.87[EUR][1000 genomes]
rs7070916	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074093	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074112	0.87[EUR][1000 genomes]
rs7074290	0.87[EUR][1000 genomes]
rs7077349	0.86[EUR][1000 genomes]
rs7081362	0.90[EUR][1000 genomes]
rs7085805	0.87[EUR][1000 genomes]
rs7087789	0.85[ASN][1000 genomes]
rs7089108	0.87[EUR][1000 genomes]
rs7089326	0.87[EUR][1000 genomes]
rs7089473	0.87[EUR][1000 genomes]
rs7090618	0.86[EUR][1000 genomes]
rs7092444	0.88[EUR][1000 genomes]
rs7095702	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7095818	0.88[EUR][1000 genomes]
rs7096466	0.86[EUR][1000 genomes]
rs7096826	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs735936	0.84[EUR][1000 genomes]
rs7893678	0.87[EUR][1000 genomes]
rs7895001	0.87[EUR][1000 genomes]
rs7895379	0.87[EUR][1000 genomes]
rs7896461	0.90[EUR][1000 genomes]
rs7898670	0.88[EUR][1000 genomes]
rs7899264	0.87[EUR][1000 genomes]
rs7901438	0.87[EUR][1000 genomes]
rs7902655	0.87[EUR][1000 genomes]
rs7904847	0.87[EUR][1000 genomes]
rs7906112	0.87[EUR][1000 genomes]
rs7909550	0.87[EUR][1000 genomes]
rs7910001	0.87[EUR][1000 genomes]
rs7912347	0.88[EUR][1000 genomes]
rs7912464	0.88[EUR][1000 genomes]
rs7914590	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919866	0.90[EUR][1000 genomes]
rs7921817	0.90[EUR][1000 genomes]
rs8181361	0.87[EUR][1000 genomes]
rs8181406	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9325443	0.81[EUR][1000 genomes]
rs962524	0.88[EUR][1000 genomes]
rs9663129	0.87[EUR][1000 genomes]
rs980520	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35754486	LINC00865	cis	Artery Tibial	GTEx
rs35754486	LINC00865	cis	Nerve Tibial	GTEx
rs35754486	RP11-248C1.3	cis	Artery Tibial	GTEx

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
4	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:91506400-91544800	Weak transcription	Ovary	ovary
7	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:91506600-91542000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
10	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:91521000-91542800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:91522000-91541800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
14	chr10:91523400-91541400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:91523400-91542600	Weak transcription	Osteobl	bone
16	chr10:91523400-91549000	Weak transcription	K562	blood
17	chr10:91523600-91542000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:91523600-91544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:91528600-91542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:91529600-91549000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:91529800-91542600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:91530000-91541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:91530000-91542600	Weak transcription	Fetal Lung	lung
24	chr10:91531200-91543000	Weak transcription	NH-A	brain
25	chr10:91531600-91543000	Weak transcription	Fetal Intestine Large	intestine
26	chr10:91532200-91542600	Weak transcription	HUVEC	blood vessel
27	chr10:91533200-91554400	Weak transcription	NHEK	skin
28	chr10:91533600-91544600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:91533800-91543200	Weak transcription	NHDF-Ad	bronchial
30	chr10:91534800-91542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:91535200-91542200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:91535200-91544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:91536000-91541800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:91537000-91544200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:91537800-91541600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:91538400-91545000	Weak transcription	A549	lung
37	chr10:91539000-91544400	Weak transcription	Spleen	Spleen
38	chr10:91539200-91541600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr10:91539400-91541400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:91539400-91541400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:91539400-91542000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:91539600-91542600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:91539800-91541400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:91539800-91541400	Strong transcription	Fetal Thymus	thymus
45	chr10:91539800-91541400	Strong transcription	NHLF	lung
46	chr10:91539800-91541600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr10:91539800-91541600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:91539800-91541600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:91539800-91541600	Strong transcription	Fetal Muscle Leg	muscle
50	chr10:91539800-91542400	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links