Variant report

Variant	rs35339677
Chromosome Location	chr10:91508353-91508354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91499794..91502654-chr10:91508308..91511090,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10881632	0.87[AFR][1000 genomes]
rs11185867	0.87[AFR][1000 genomes]
rs11185879	0.83[AFR][1000 genomes]
rs11813204	0.81[AFR][1000 genomes]
rs11814174	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11816741	0.87[AFR][1000 genomes]
rs12767644	0.87[AFR][1000 genomes]
rs12775585	0.83[ASN][1000 genomes]
rs34548995	0.83[ASN][1000 genomes]
rs35754486	0.83[AFR][1000 genomes]
rs7908739	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs35339677	LINC00865	cis	Skin Sun Exposed Lower leg	GTEx
rs35339677	LINC00865	cis	Adipose Subcutaneous	GTEx
rs35339677	LINC00865	cis	Artery Tibial	GTEx
rs35339677	RP11-248C1.3	cis	Esophagus Muscularis	GTEx
rs35339677	LINC00865	cis	Nerve Tibial	GTEx
rs35339677	LINC00865	cis	lung	GTEx
rs35339677	RP11-248C1.3	cis	Nerve Tibial	GTEx
rs35339677	RP11-248C1.3	cis	Artery Tibial	GTEx
rs35339677	RP11-248C1.3	cis	Thyroid	GTEx
rs35339677	RP11-248C1.3	cis	Adipose Subcutaneous	GTEx
rs35339677	RP11-248C1.3	cis	lung	GTEx
rs35339677	LINC00865	cis	Thyroid	GTEx
rs35339677	LINC00865	cis	Esophagus Muscularis	GTEx

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
4	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
8	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:91479600-91510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
13	chr10:91483200-91523600	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:91485000-91532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:91489800-91520400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:91492000-91522000	Weak transcription	Adipose Nuclei	Adipose
17	chr10:91493800-91508600	Strong transcription	Fetal Thymus	thymus
18	chr10:91496200-91508600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:91498400-91518200	Weak transcription	K562	blood
20	chr10:91499200-91518000	Weak transcription	NHDF-Ad	bronchial
21	chr10:91499800-91515600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:91500200-91510200	Weak transcription	HUVEC	blood vessel
23	chr10:91504200-91531800	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:91505000-91536600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:91506000-91520200	Weak transcription	Osteobl	bone
27	chr10:91506200-91520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:91506200-91522000	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:91506400-91512200	Weak transcription	HepG2	liver
30	chr10:91506400-91514400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:91506400-91515400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:91506400-91515400	Weak transcription	A549	lung
33	chr10:91506400-91518200	Weak transcription	NH-A	brain
34	chr10:91506400-91518600	Weak transcription	HMEC	breast
35	chr10:91506400-91519000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:91506400-91519000	Weak transcription	Liver	Liver
37	chr10:91506400-91519200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:91506400-91519800	Weak transcription	Primary T cells from cord blood	blood
39	chr10:91506400-91519800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:91506400-91520000	Weak transcription	NHLF	lung
41	chr10:91506400-91520400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:91506400-91521200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:91506400-91521600	Weak transcription	Left Ventricle	heart
44	chr10:91506400-91521800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:91506400-91531200	Weak transcription	Esophagus	oesophagus
46	chr10:91506400-91539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:91506400-91544800	Weak transcription	Ovary	ovary
50	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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