Variant report
| Variant | rs11814174 |
|---|---|
| Chromosome Location | chr10:91443373-91443374 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:91427349..91430030-chr10:91442278..91445461,3 | K562 | blood: | |
| 2 | chr10:91441849..91444725-chr10:91459786..91462291,3 | MCF-7 | breast: | |
| 3 | chr10:91427763..91430030-chr10:91442877..91445461,2 | K562 | blood: | |
| 4 | chr10:91434484..91437093-chr10:91443083..91444662,2 | K562 | blood: | |
| 5 | chr10:91443236..91445812-chr10:91446483..91448919,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PANK1-5 | chr10:91441037-91444539 | l_346_NR_026835 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138182 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs11816741 | 0.93[YRI][hapmap] |
| rs12767644 | 0.93[YRI][hapmap] |
| rs12773865 | 0.91[AFR][1000 genomes] |
| rs17385594 | 1.00[JPT][hapmap] |
| rs35339677 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
mRNA abundance (count:10)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11814174 | LINC00865 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs11814174 | LINC00865 | cis | Artery Tibial | GTEx |
| rs11814174 | LINC00865 | cis | Nerve Tibial | GTEx |
| rs11814174 | LINC00865 | cis | lung | GTEx |
| rs11814174 | LINC00865 | cis | Thyroid | GTEx |
| rs11814174 | RP11-248C1.3 | cis | Artery Tibial | GTEx |
| rs11814174 | LINC00865 | cis | Whole Blood | GTEx |
| rs11814174 | RP11-248C1.3 | cis | Nerve Tibial | GTEx |
| rs11814174 | RP11-248C1.3 | cis | Adipose Subcutaneous | GTEx |
| rs11814174 | LINC00865 | cis | Adipose Subcutaneous | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
