Variant report

Variant	rs11816741
Chromosome Location	chr10:91466560-91466561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91403552..91405142-chr10:91465517..91468857,3	MCF-7	breast:
2	chr10:91460192..91463892-chr10:91466446..91468629,3	MCF-7	breast:
3	chr10:91385865..91388644-chr10:91465383..91467625,2	K562	blood:
4	chr10:91463828..91466884-chr10:91467056..91470344,3	MCF-7	breast:
5	chr10:91458034..91463117-chr10:91466111..91469276,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 197 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10082422	0.91[EUR][1000 genomes]
rs10430622	0.88[EUR][1000 genomes]
rs10430645	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10430646	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10430647	0.88[EUR][1000 genomes]
rs1048057	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10509579	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1062465	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10785893	0.84[EUR][1000 genomes]
rs10785894	0.84[EUR][1000 genomes]
rs10785895	0.84[EUR][1000 genomes]
rs10785896	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10785899	0.91[EUR][1000 genomes]
rs10785901	0.85[EUR][1000 genomes]
rs10785902	0.87[EUR][1000 genomes]
rs10881614	0.94[CEU][hapmap]
rs10881615	0.84[EUR][1000 genomes]
rs10881616	0.84[EUR][1000 genomes]
rs10881617	0.82[EUR][1000 genomes]
rs10881618	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs10881619	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10881621	0.84[EUR][1000 genomes]
rs10881623	0.84[EUR][1000 genomes]
rs10881626	0.91[EUR][1000 genomes]
rs10881627	0.89[EUR][1000 genomes]
rs10881628	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs10881629	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs10881630	0.88[EUR][1000 genomes]
rs10881631	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881633	0.88[EUR][1000 genomes]
rs10881634	0.88[EUR][1000 genomes]
rs10881635	0.88[EUR][1000 genomes]
rs10881636	0.88[EUR][1000 genomes]
rs10881637	0.88[EUR][1000 genomes]
rs10881638	0.88[EUR][1000 genomes]
rs10881639	0.88[EUR][1000 genomes]
rs10881640	0.88[EUR][1000 genomes]
rs10881643	0.88[EUR][1000 genomes]
rs10881644	0.88[EUR][1000 genomes]
rs10881646	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881647	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881648	0.86[EUR][1000 genomes]
rs10881649	0.87[EUR][1000 genomes]
rs10881650	0.83[EUR][1000 genomes]
rs10881651	0.87[EUR][1000 genomes]
rs10881652	0.84[EUR][1000 genomes]
rs10881653	0.88[EUR][1000 genomes]
rs10881654	0.87[EUR][1000 genomes]
rs10881655	0.87[EUR][1000 genomes]
rs10881656	0.87[EUR][1000 genomes]
rs10881657	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881658	0.87[EUR][1000 genomes]
rs10881659	0.87[EUR][1000 genomes]
rs10881660	0.87[EUR][1000 genomes]
rs10881662	0.87[EUR][1000 genomes]
rs10881663	0.82[EUR][1000 genomes]
rs10881664	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs10881665	0.87[EUR][1000 genomes]
rs10881666	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10881667	0.86[EUR][1000 genomes]
rs10881668	0.86[EUR][1000 genomes]
rs10881669	0.86[EUR][1000 genomes]
rs10881670	0.86[EUR][1000 genomes]
rs10982	0.86[EUR][1000 genomes]
rs11185825	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11185830	0.84[EUR][1000 genomes]
rs11185831	0.83[EUR][1000 genomes]
rs11185833	0.84[EUR][1000 genomes]
rs11185851	0.88[EUR][1000 genomes]
rs11185852	0.88[EUR][1000 genomes]
rs11185853	0.88[EUR][1000 genomes]
rs11185855	0.88[EUR][1000 genomes]
rs11185858	0.88[EUR][1000 genomes]
rs11185861	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs11185864	0.88[EUR][1000 genomes]
rs11185867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11185870	0.87[EUR][1000 genomes]
rs11185878	0.86[EUR][1000 genomes]
rs11185879	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185880	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11185881	0.86[EUR][1000 genomes]
rs11185884	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11185886	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11185889	0.83[EUR][1000 genomes]
rs1126480	0.87[EUR][1000 genomes]
rs11813204	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813214	0.86[EUR][1000 genomes]
rs11814174	0.93[YRI][hapmap]
rs12218194	0.84[EUR][1000 genomes]
rs12243552	0.86[EUR][1000 genomes]
rs12247868	0.87[EUR][1000 genomes]
rs12248156	0.88[EUR][1000 genomes]
rs12249500	0.87[EUR][1000 genomes]
rs12250365	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12253793	0.86[EUR][1000 genomes]
rs12254296	0.86[EUR][1000 genomes]
rs12256229	0.84[EUR][1000 genomes]
rs12264026	0.86[EUR][1000 genomes]
rs12264044	0.86[EUR][1000 genomes]
rs12763178	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12767644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12773740	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12773865	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776628	0.85[EUR][1000 genomes]
rs12779880	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12948	0.86[EUR][1000 genomes]
rs1409358	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1555868	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17125278	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1886997	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1886998	0.88[EUR][1000 genomes]
rs1887037	0.83[EUR][1000 genomes]
rs2017527	0.87[EUR][1000 genomes]
rs2026549	0.87[EUR][1000 genomes]
rs2026550	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2026551	0.87[EUR][1000 genomes]
rs2077946	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs2094212	0.84[EUR][1000 genomes]
rs2094213	0.84[EUR][1000 genomes]
rs2182396	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs2418928	0.88[EUR][1000 genomes]
rs34089128	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34135002	0.83[EUR][1000 genomes]
rs35339677	0.87[AFR][1000 genomes]
rs35754486	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35929113	0.88[EUR][1000 genomes]
rs36190073	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740036	0.87[EUR][1000 genomes]
rs3740037	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3758384	0.88[EUR][1000 genomes]
rs3758385	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs3758389	0.83[EUR][1000 genomes]
rs3824605	0.80[EUR][1000 genomes]
rs3824609	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3908479	0.84[EUR][1000 genomes]
rs4126596	0.86[EUR][1000 genomes]
rs4558081	0.84[EUR][1000 genomes]
rs56664691	0.87[EUR][1000 genomes]
rs61481124	0.87[EUR][1000 genomes]
rs61870788	0.87[EUR][1000 genomes]
rs6586217	0.88[EUR][1000 genomes]
rs6586218	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7070916	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073779	0.84[EUR][1000 genomes]
rs7074093	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074112	0.88[EUR][1000 genomes]
rs7074290	0.88[EUR][1000 genomes]
rs7076259	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7077349	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7081362	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7085805	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7087240	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7087789	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7088104	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7088570	0.84[EUR][1000 genomes]
rs7089108	0.88[EUR][1000 genomes]
rs7089326	0.88[EUR][1000 genomes]
rs7089473	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7090618	0.88[EUR][1000 genomes]
rs7092444	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7094633	0.84[EUR][1000 genomes]
rs7095702	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7095818	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7096466	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7096826	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7097496	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7100603	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs716781	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs727427	0.88[CEU][hapmap]
rs735936	0.80[EUR][1000 genomes]
rs7893678	0.88[EUR][1000 genomes]
rs7895001	0.88[EUR][1000 genomes]
rs7895379	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7896461	0.86[EUR][1000 genomes]
rs7898670	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs7899264	0.88[EUR][1000 genomes]
rs7901438	0.88[EUR][1000 genomes]
rs7902655	0.88[EUR][1000 genomes]
rs7904847	0.88[EUR][1000 genomes]
rs7906112	0.88[EUR][1000 genomes]
rs7907852	0.94[CEU][hapmap]
rs7909550	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7910001	0.88[EUR][1000 genomes]
rs7912347	0.87[EUR][1000 genomes]
rs7912464	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7914590	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919866	0.86[EUR][1000 genomes]
rs7921817	0.86[EUR][1000 genomes]
rs8181361	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs8181406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325443	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs9325444	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs943129	0.83[EUR][1000 genomes]
rs962524	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9663129	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs980520	0.88[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11816741	LINC00865	cis	Artery Tibial	GTEx
rs11816741	LINC00865	cis	Nerve Tibial	GTEx
rs11816741	RP11-248C1.3	cis	Artery Tibial	GTEx

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91466600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:91462200-91467000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:91462200-91467200	Weak transcription	Fetal Brain Male	brain
7	chr10:91462200-91470000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:91462200-91470000	Weak transcription	Ovary	ovary
9	chr10:91462200-91472000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:91462200-91474000	Weak transcription	Spleen	Spleen
11	chr10:91462200-91476600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:91462200-91476600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:91462200-91476600	Weak transcription	Fetal Intestine Large	intestine
14	chr10:91462200-91477600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
17	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
19	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
21	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:91462200-91505800	Weak transcription	Gastric	stomach
24	chr10:91462200-91505800	Weak transcription	Lung	lung
25	chr10:91462400-91467000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:91462400-91472000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:91462400-91476000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:91462400-91477600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:91462400-91479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:91462400-91480000	Weak transcription	Fetal Kidney	kidney
31	chr10:91462400-91480600	Weak transcription	Primary T cells from cord blood	blood
32	chr10:91462400-91480600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:91462600-91470200	Weak transcription	HSMM	muscle
37	chr10:91462600-91471600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:91462600-91472000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:91462600-91475800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:91462600-91477600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:91462800-91469600	Weak transcription	Fetal Lung	lung
42	chr10:91462800-91475800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:91462800-91476600	Weak transcription	Primary B cells from cord blood	blood
44	chr10:91463000-91472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:91463200-91466600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:91463200-91470600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:91463200-91477600	Weak transcription	NH-A	brain
48	chr10:91463400-91470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:91463400-91470600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:91463400-91471600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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