Variant report

Variant	rs10881663
Chromosome Location	chr10:91526067-91526068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10082422	0.87[EUR][1000 genomes]
rs10430622	0.89[EUR][1000 genomes]
rs10430645	0.89[EUR][1000 genomes]
rs10430646	0.89[EUR][1000 genomes]
rs10430647	0.89[EUR][1000 genomes]
rs1048057	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509579	0.89[EUR][1000 genomes]
rs1062465	0.89[EUR][1000 genomes]
rs10785893	0.81[EUR][1000 genomes]
rs10785894	0.81[EUR][1000 genomes]
rs10785895	0.81[EUR][1000 genomes]
rs10785896	0.81[EUR][1000 genomes]
rs10785899	0.87[EUR][1000 genomes]
rs10785901	0.89[EUR][1000 genomes]
rs10785902	0.91[EUR][1000 genomes]
rs10785903	0.85[ASN][1000 genomes]
rs10881614	0.80[ASN][1000 genomes]
rs10881615	0.81[EUR][1000 genomes]
rs10881616	0.81[EUR][1000 genomes]
rs10881617	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10881618	0.81[EUR][1000 genomes]
rs10881619	0.81[EUR][1000 genomes]
rs10881621	0.81[EUR][1000 genomes]
rs10881623	0.81[EUR][1000 genomes]
rs10881626	0.87[EUR][1000 genomes]
rs10881627	0.86[EUR][1000 genomes]
rs10881628	0.88[EUR][1000 genomes]
rs10881629	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881630	0.89[EUR][1000 genomes]
rs10881631	0.89[EUR][1000 genomes]
rs10881632	0.83[EUR][1000 genomes]
rs10881633	0.89[EUR][1000 genomes]
rs10881634	0.89[EUR][1000 genomes]
rs10881635	0.89[EUR][1000 genomes]
rs10881636	0.89[EUR][1000 genomes]
rs10881637	0.89[EUR][1000 genomes]
rs10881638	0.89[EUR][1000 genomes]
rs10881639	0.89[EUR][1000 genomes]
rs10881640	0.89[EUR][1000 genomes]
rs10881643	0.89[EUR][1000 genomes]
rs10881644	0.89[EUR][1000 genomes]
rs10881646	0.89[EUR][1000 genomes]
rs10881647	0.89[EUR][1000 genomes]
rs10881648	0.90[EUR][1000 genomes]
rs10881649	0.91[EUR][1000 genomes]
rs10881650	0.87[EUR][1000 genomes]
rs10881651	0.91[EUR][1000 genomes]
rs10881652	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881654	0.91[EUR][1000 genomes]
rs10881655	0.91[EUR][1000 genomes]
rs10881656	0.91[EUR][1000 genomes]
rs10881657	0.87[EUR][1000 genomes]
rs10881658	0.91[EUR][1000 genomes]
rs10881659	0.91[EUR][1000 genomes]
rs10881660	0.91[EUR][1000 genomes]
rs10881662	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10881664	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10881665	0.91[EUR][1000 genomes]
rs10881666	0.89[EUR][1000 genomes]
rs10881667	0.89[EUR][1000 genomes]
rs10881668	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10881669	0.89[EUR][1000 genomes]
rs10881670	0.89[EUR][1000 genomes]
rs10982	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11185830	0.81[EUR][1000 genomes]
rs11185833	0.81[EUR][1000 genomes]
rs11185851	0.89[EUR][1000 genomes]
rs11185852	0.89[EUR][1000 genomes]
rs11185853	0.89[EUR][1000 genomes]
rs11185855	0.89[EUR][1000 genomes]
rs11185858	0.89[EUR][1000 genomes]
rs11185861	0.89[EUR][1000 genomes]
rs11185864	0.89[EUR][1000 genomes]
rs11185866	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11185867	0.85[EUR][1000 genomes]
rs11185870	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11185878	0.89[EUR][1000 genomes]
rs11185879	0.83[EUR][1000 genomes]
rs11185880	0.89[EUR][1000 genomes]
rs11185881	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1126480	0.91[EUR][1000 genomes]
rs11813204	0.82[EUR][1000 genomes]
rs11813214	0.89[EUR][1000 genomes]
rs11816741	0.82[EUR][1000 genomes]
rs12218194	0.81[EUR][1000 genomes]
rs12243552	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12247868	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12248156	0.89[EUR][1000 genomes]
rs12249500	0.91[EUR][1000 genomes]
rs12250365	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12253793	0.89[EUR][1000 genomes]
rs12254296	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12256229	0.88[EUR][1000 genomes]
rs12264026	0.89[EUR][1000 genomes]
rs12264044	0.90[EUR][1000 genomes]
rs12767644	0.85[EUR][1000 genomes]
rs12773740	0.86[EUR][1000 genomes]
rs12948	0.89[EUR][1000 genomes]
rs1409358	0.81[EUR][1000 genomes]
rs1555868	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1886997	0.89[EUR][1000 genomes]
rs1886998	0.89[EUR][1000 genomes]
rs2017527	0.91[EUR][1000 genomes]
rs2026549	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2026550	0.88[EUR][1000 genomes]
rs2026551	0.91[EUR][1000 genomes]
rs2077946	0.91[EUR][1000 genomes]
rs2094212	0.81[EUR][1000 genomes]
rs2094213	0.81[EUR][1000 genomes]
rs2182396	0.89[EUR][1000 genomes]
rs2418928	0.88[EUR][1000 genomes]
rs34135002	0.83[EUR][1000 genomes]
rs35754486	0.83[EUR][1000 genomes]
rs35929113	0.89[EUR][1000 genomes]
rs3740036	0.91[EUR][1000 genomes]
rs3740037	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3758384	0.89[EUR][1000 genomes]
rs3758385	0.89[EUR][1000 genomes]
rs3758389	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824605	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3824609	0.91[EUR][1000 genomes]
rs3908479	0.81[EUR][1000 genomes]
rs4126596	0.89[EUR][1000 genomes]
rs4558081	0.81[EUR][1000 genomes]
rs56664691	0.91[EUR][1000 genomes]
rs61481124	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61870788	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6586217	0.89[EUR][1000 genomes]
rs6586218	0.89[EUR][1000 genomes]
rs7073779	0.81[EUR][1000 genomes]
rs7074093	0.86[EUR][1000 genomes]
rs7074112	0.89[EUR][1000 genomes]
rs7074290	0.89[EUR][1000 genomes]
rs7077349	0.88[EUR][1000 genomes]
rs7081362	0.89[EUR][1000 genomes]
rs7083351	0.85[ASN][1000 genomes]
rs7085805	0.89[EUR][1000 genomes]
rs7087240	0.81[EUR][1000 genomes]
rs7088104	0.81[EUR][1000 genomes]
rs7088570	0.81[EUR][1000 genomes]
rs7089108	0.89[EUR][1000 genomes]
rs7089326	0.89[EUR][1000 genomes]
rs7089473	0.89[EUR][1000 genomes]
rs7090618	0.88[EUR][1000 genomes]
rs7092444	0.91[EUR][1000 genomes]
rs7094633	0.81[EUR][1000 genomes]
rs7095818	0.91[EUR][1000 genomes]
rs7096466	0.88[EUR][1000 genomes]
rs7096826	0.87[EUR][1000 genomes]
rs7097496	0.81[EUR][1000 genomes]
rs7100603	0.81[EUR][1000 genomes]
rs7893678	0.89[EUR][1000 genomes]
rs7895001	0.89[EUR][1000 genomes]
rs7895379	0.89[EUR][1000 genomes]
rs7896461	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7898670	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7899264	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7901438	0.89[EUR][1000 genomes]
rs7902655	0.89[EUR][1000 genomes]
rs7904847	0.89[EUR][1000 genomes]
rs7906112	0.89[EUR][1000 genomes]
rs7909550	0.89[EUR][1000 genomes]
rs7910001	0.89[EUR][1000 genomes]
rs7912347	0.91[EUR][1000 genomes]
rs7912464	0.91[EUR][1000 genomes]
rs7914590	0.86[EUR][1000 genomes]
rs7919866	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7921817	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8181361	0.89[EUR][1000 genomes]
rs8181406	0.86[EUR][1000 genomes]
rs9325443	0.82[EUR][1000 genomes]
rs9325444	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943129	0.80[EUR][1000 genomes]
rs962524	0.91[EUR][1000 genomes]
rs9663129	0.89[EUR][1000 genomes]
rs980520	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10881663	RP11-248C1.3	cis	Artery Tibial	GTEx
rs10881663	LINC00865	cis	Adipose Subcutaneous	GTEx
rs10881663	LINC00865	cis	Artery Tibial	GTEx
rs10881663	LINC00865	cis	Nerve Tibial	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
3	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
7	chr10:91485000-91532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:91504200-91531800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:91505000-91536600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:91506400-91531200	Weak transcription	Esophagus	oesophagus
12	chr10:91506400-91539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:91506400-91544800	Weak transcription	Ovary	ovary
16	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:91506600-91540000	Weak transcription	Fetal Stomach	stomach
18	chr10:91506600-91540200	Weak transcription	Fetal Intestine Small	intestine
19	chr10:91506600-91540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:91506600-91542000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:91513800-91538400	Weak transcription	Psoas Muscle	Psoas
24	chr10:91517400-91536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:91519600-91533600	Weak transcription	Right Ventricle	heart
26	chr10:91520200-91532000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:91520600-91528600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:91521000-91542800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:91522000-91541800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:91522200-91529200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:91522400-91528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:91522400-91539800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:91522600-91527600	Weak transcription	HepG2	liver
34	chr10:91522800-91528400	Weak transcription	GM12878-XiMat	blood
35	chr10:91523000-91527200	Weak transcription	Primary T cells from cord blood	blood
36	chr10:91523000-91527200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:91523000-91527600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:91523000-91530800	Weak transcription	NHEK	skin
39	chr10:91523000-91531000	Weak transcription	Left Ventricle	heart
40	chr10:91523000-91540000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:91523000-91540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
43	chr10:91523200-91528400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:91523200-91528400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:91523200-91530800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:91523200-91533000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:91523200-91540000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:91523200-91540000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:91523200-91540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:91523200-91540200	Weak transcription	Fetal Brain Female	brain

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