Variant report

Variant	rs7073779
Chromosome Location	chr10:91415060-91415061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:91414980-91415130	GM12869	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91414444..91417136-chr10:91423448..91425186,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225836	TF binding region

Extended variants
information (count: 214 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs10082422	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430622	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430645	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430646	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430647	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1048057	0.88[EUR][1000 genomes]
rs10509579	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062465	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748527	0.82[ASN][1000 genomes]
rs10785893	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785894	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785895	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785896	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785899	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785901	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10785902	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881615	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881616	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881617	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10881618	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881619	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881626	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881627	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881628	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881629	0.89[EUR][1000 genomes]
rs10881630	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881631	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881632	0.83[EUR][1000 genomes]
rs10881633	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881634	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881635	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881636	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881637	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881638	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881639	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10881640	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881643	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881644	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881645	0.94[ASN][1000 genomes]
rs10881646	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881647	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881648	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881649	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881650	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881651	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881652	0.87[EUR][1000 genomes]
rs10881653	0.81[AMR][1000 genomes]
rs10881654	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881655	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881656	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881657	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881658	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881659	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881660	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881662	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881663	0.81[EUR][1000 genomes]
rs10881664	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881665	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881666	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881667	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881668	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881669	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881670	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881671	0.89[ASN][1000 genomes]
rs10881673	0.82[ASN][1000 genomes]
rs10881674	0.82[ASN][1000 genomes]
rs10881675	0.82[ASN][1000 genomes]
rs10982	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185826	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185830	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185831	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185833	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185850	0.96[ASN][1000 genomes]
rs11185851	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185852	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11185853	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185855	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185858	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185861	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11185864	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11185867	0.81[EUR][1000 genomes]
rs11185870	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185878	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185880	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185881	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185882	0.82[ASN][1000 genomes]
rs1126480	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11813204	0.84[EUR][1000 genomes]
rs11813214	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11816741	0.84[EUR][1000 genomes]
rs12218194	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243552	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12247868	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12248156	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12249500	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12250365	0.85[EUR][1000 genomes]
rs12253793	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12254296	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256229	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12264026	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12264044	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12767644	0.81[EUR][1000 genomes]
rs12769113	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12773740	0.83[EUR][1000 genomes]
rs12773865	0.91[EUR][1000 genomes]
rs12779880	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12948	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324699	0.82[ASN][1000 genomes]
rs1324700	0.82[ASN][1000 genomes]
rs1409318	0.82[ASN][1000 genomes]
rs1409319	0.82[ASN][1000 genomes]
rs1409358	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555868	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17125278	0.85[AMR][1000 genomes]
rs1886997	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1886998	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887037	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017527	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2026549	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2026550	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2026551	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2077946	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2094212	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182396	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418928	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2419057	0.82[ASN][1000 genomes]
rs2419085	0.81[ASN][1000 genomes]
rs2900802	0.82[ASN][1000 genomes]
rs2900813	0.82[ASN][1000 genomes]
rs34135002	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35929113	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36190073	0.81[AMR][1000 genomes]
rs3740036	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740037	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3758384	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758385	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758389	0.85[EUR][1000 genomes]
rs3824605	0.83[EUR][1000 genomes]
rs3824609	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3908479	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4126596	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4558081	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934498	0.82[ASN][1000 genomes]
rs4934501	0.82[ASN][1000 genomes]
rs4934502	0.82[ASN][1000 genomes]
rs4934503	0.82[ASN][1000 genomes]
rs55772495	0.88[ASN][1000 genomes]
rs56664691	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61481124	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61870788	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6586217	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586218	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7070916	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074093	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7074112	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074290	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7076259	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077349	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081362	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7083066	0.82[ASN][1000 genomes]
rs7085805	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087240	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087738	0.82[ASN][1000 genomes]
rs7087789	0.82[AMR][1000 genomes]
rs7088104	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088570	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089108	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089326	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089473	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090618	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092444	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7094633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095818	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096466	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7096826	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7097496	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100603	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100756	0.82[ASN][1000 genomes]
rs716781	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727427	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7893678	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894081	0.82[ASN][1000 genomes]
rs7895001	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895379	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896461	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898670	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7899264	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7901438	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7902655	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7902875	0.88[ASN][1000 genomes]
rs7904847	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906112	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907852	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909550	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910001	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7912347	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7912464	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7913109	0.82[ASN][1000 genomes]
rs7914590	0.83[EUR][1000 genomes]
rs7919866	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7921817	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924196	0.82[ASN][1000 genomes]
rs8181361	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181406	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9325443	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9325444	0.94[EUR][1000 genomes]
rs943129	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962524	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9663129	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9665314	0.82[ASN][1000 genomes]
rs980520	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7073779	RP11-248C1.3	cis	Artery Tibial	GTEx
rs7073779	LINC00865	cis	Nerve Tibial	GTEx
rs7073779	LINC00865	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91406600-91415800	Weak transcription	Colonic Mucosa	Colon
2	chr10:91407200-91418400	Weak transcription	Psoas Muscle	Psoas
3	chr10:91409000-91418800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:91412400-91415800	Enhancers	HepG2	liver
5	chr10:91413600-91416800	Weak transcription	Osteobl	bone
6	chr10:91413800-91418400	Weak transcription	NH-A	brain
7	chr10:91414000-91417400	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr10:91414400-91416200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr10:91414600-91415800	Enhancers	Liver	Liver
10	chr10:91414600-91415800	Enhancers	Fetal Intestine Large	intestine
11	chr10:91414600-91416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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