Variant report

Variant	rs12779880
Chromosome Location	chr10:91419294-91419295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91406958..91409221-chr10:91418056..91419890,2	MCF-7	breast:

Extended variants
information (count: 188 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10082422	0.87[EUR][1000 genomes]
rs10430622	0.85[EUR][1000 genomes]
rs10430645	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10430646	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10430647	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1048057	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10509579	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1062465	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10785893	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785894	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785895	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785896	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785899	0.87[EUR][1000 genomes]
rs10785901	0.82[EUR][1000 genomes]
rs10785902	0.84[EUR][1000 genomes]
rs10881614	1.00[CEU][hapmap]
rs10881615	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881616	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881617	0.92[EUR][1000 genomes]
rs10881618	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881619	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881621	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881623	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881626	0.87[EUR][1000 genomes]
rs10881627	0.86[EUR][1000 genomes]
rs10881628	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881629	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10881630	0.85[EUR][1000 genomes]
rs10881631	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881632	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881633	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881634	0.85[EUR][1000 genomes]
rs10881635	0.85[EUR][1000 genomes]
rs10881636	0.85[EUR][1000 genomes]
rs10881637	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881638	0.85[EUR][1000 genomes]
rs10881639	0.85[EUR][1000 genomes]
rs10881640	0.85[EUR][1000 genomes]
rs10881643	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881644	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881646	0.85[EUR][1000 genomes]
rs10881647	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881648	0.83[EUR][1000 genomes]
rs10881649	0.84[EUR][1000 genomes]
rs10881650	0.80[EUR][1000 genomes]
rs10881651	0.84[EUR][1000 genomes]
rs10881652	0.81[EUR][1000 genomes]
rs10881653	0.83[AMR][1000 genomes]
rs10881654	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881655	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881656	0.84[EUR][1000 genomes]
rs10881658	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881659	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881660	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881662	0.84[EUR][1000 genomes]
rs10881664	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10881665	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10881666	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881667	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10881668	0.82[EUR][1000 genomes]
rs10881669	0.82[EUR][1000 genomes]
rs10881670	0.82[EUR][1000 genomes]
rs10982	0.82[EUR][1000 genomes]
rs11185825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185826	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11185830	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11185831	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11185833	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11185851	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185852	0.85[EUR][1000 genomes]
rs11185853	0.85[EUR][1000 genomes]
rs11185855	0.85[EUR][1000 genomes]
rs11185858	0.85[EUR][1000 genomes]
rs11185861	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11185864	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185867	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11185870	0.84[EUR][1000 genomes]
rs11185878	0.82[EUR][1000 genomes]
rs11185879	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11185880	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11185881	0.82[EUR][1000 genomes]
rs11185886	0.81[ASN][1000 genomes]
rs1126480	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11813204	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11813214	0.82[EUR][1000 genomes]
rs11816741	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12218194	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12243552	0.82[EUR][1000 genomes]
rs12247868	0.84[EUR][1000 genomes]
rs12248156	0.85[EUR][1000 genomes]
rs12249500	0.84[EUR][1000 genomes]
rs12250365	0.92[CEU][hapmap]
rs12253793	0.82[EUR][1000 genomes]
rs12254296	0.82[EUR][1000 genomes]
rs12256229	0.81[EUR][1000 genomes]
rs12264026	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12264044	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12763178	0.81[ASN][1000 genomes]
rs12767644	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12769113	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12773740	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12773865	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12948	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1409358	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1555868	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17125278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1886997	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1886998	0.85[EUR][1000 genomes]
rs1887037	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2017527	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2026549	0.84[EUR][1000 genomes]
rs2026550	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2026551	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2077946	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2094212	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2094213	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2182396	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2418928	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34135002	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35754486	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35929113	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36190073	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3740036	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3740037	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs3758384	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3758385	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3824609	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3908479	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4126596	0.82[EUR][1000 genomes]
rs4558081	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56664691	0.84[EUR][1000 genomes]
rs61481124	0.84[EUR][1000 genomes]
rs61870788	0.84[EUR][1000 genomes]
rs6586217	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6586218	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7070916	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073779	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074093	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074112	0.85[EUR][1000 genomes]
rs7074290	0.85[EUR][1000 genomes]
rs7076259	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7077349	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7081362	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7085805	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7087240	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7087789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088104	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7088570	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7089108	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7089326	0.85[EUR][1000 genomes]
rs7089473	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7090618	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7092444	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7094633	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7095702	0.81[ASN][1000 genomes]
rs7095818	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7096466	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7096826	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097496	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7100603	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs716781	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs727427	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs7893678	0.85[EUR][1000 genomes]
rs7895001	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7895379	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7896461	0.82[EUR][1000 genomes]
rs7898670	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7899264	0.85[EUR][1000 genomes]
rs7901438	0.85[EUR][1000 genomes]
rs7902655	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7904847	0.85[EUR][1000 genomes]
rs7906112	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7907852	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7909550	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7910001	0.85[EUR][1000 genomes]
rs7912347	0.84[EUR][1000 genomes]
rs7912464	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7914590	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7919866	0.82[EUR][1000 genomes]
rs7921817	0.82[EUR][1000 genomes]
rs8181361	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs8181406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9325443	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9325444	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs943129	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs962524	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9663129	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs980520	0.85[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12779880	LINC00865	cis	Nerve Tibial	GTEx
rs12779880	RP11-248C1.3	cis	Nerve Tibial	GTEx
rs12779880	LINC00865	cis	Adipose Subcutaneous	GTEx
rs12779880	LINC00865	cis	Artery Tibial	GTEx
rs12779880	RP11-248C1.3	cis	Artery Tibial	GTEx
rs12779880	LINC00865	cis	lung	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91418400-91419400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:91418400-91419400	Enhancers	HSMM	muscle
3	chr10:91418400-91419600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:91418400-91419600	Enhancers	NH-A	brain
5	chr10:91418400-91419800	Enhancers	NHLF	lung
6	chr10:91418600-91419600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:91418600-91420000	Enhancers	GM12878-XiMat	blood
8	chr10:91418800-91419400	Enhancers	HSMMtube	muscle
9	chr10:91418800-91419600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:91418800-91419600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr10:91418800-91419600	Enhancers	Fetal Stomach	stomach
12	chr10:91418800-91419600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:91419000-91419400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91419000-91419600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:91419000-91419600	Enhancers	Adipose Nuclei	Adipose
16	chr10:91419000-91419600	Enhancers	Fetal Lung	lung
17	chr10:91419000-91419800	Enhancers	Psoas Muscle	Psoas
18	chr10:91419200-91419400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:91419200-91419600	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:91419200-91419600	Enhancers	Left Ventricle	heart
21	chr10:91419200-91419600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:91419200-91419600	Flanking Active TSS	NHDF-Ad	bronchial
23	chr10:91419200-91419600	Flanking Active TSS	Osteobl	bone
24	chr10:91419200-91419800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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