Variant report

Variant	rs10881617
Chromosome Location	chr10:91422054-91422055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 207 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs10082422	0.90[EUR][1000 genomes]
rs10430622	0.88[EUR][1000 genomes]
rs10430645	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs10430646	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10430647	0.88[EUR][1000 genomes]
rs1048057	0.82[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10509579	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs1062465	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs10785893	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10785894	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10785895	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10785896	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10785899	0.90[EUR][1000 genomes]
rs10785901	0.85[EUR][1000 genomes]
rs10785902	0.87[EUR][1000 genomes]
rs10785903	0.84[ASN][1000 genomes]
rs10881614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881615	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10881616	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10881618	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10881619	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10881621	0.97[EUR][1000 genomes]
rs10881623	0.97[EUR][1000 genomes]
rs10881626	0.90[EUR][1000 genomes]
rs10881627	0.89[EUR][1000 genomes]
rs10881628	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs10881629	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881630	0.88[EUR][1000 genomes]
rs10881631	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881632	0.80[EUR][1000 genomes]
rs10881633	0.88[EUR][1000 genomes]
rs10881634	0.88[EUR][1000 genomes]
rs10881635	0.88[EUR][1000 genomes]
rs10881636	0.88[EUR][1000 genomes]
rs10881637	0.88[EUR][1000 genomes]
rs10881638	0.88[EUR][1000 genomes]
rs10881639	0.88[EUR][1000 genomes]
rs10881640	0.88[EUR][1000 genomes]
rs10881643	0.88[EUR][1000 genomes]
rs10881644	0.88[EUR][1000 genomes]
rs10881646	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881647	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs10881648	0.86[EUR][1000 genomes]
rs10881649	0.87[EUR][1000 genomes]
rs10881650	0.84[EUR][1000 genomes]
rs10881651	0.87[EUR][1000 genomes]
rs10881652	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881654	0.87[EUR][1000 genomes]
rs10881655	0.87[EUR][1000 genomes]
rs10881656	0.87[EUR][1000 genomes]
rs10881657	0.82[EUR][1000 genomes]
rs10881658	0.87[EUR][1000 genomes]
rs10881659	0.87[EUR][1000 genomes]
rs10881660	0.87[EUR][1000 genomes]
rs10881662	0.87[EUR][1000 genomes]
rs10881663	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10881664	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs10881665	0.87[EUR][1000 genomes]
rs10881666	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs10881667	0.86[EUR][1000 genomes]
rs10881668	0.86[EUR][1000 genomes]
rs10881669	0.86[EUR][1000 genomes]
rs10881670	0.86[EUR][1000 genomes]
rs10982	0.86[EUR][1000 genomes]
rs11185825	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs11185826	0.86[EUR][1000 genomes]
rs11185830	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11185831	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11185833	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11185851	0.88[EUR][1000 genomes]
rs11185852	0.88[EUR][1000 genomes]
rs11185853	0.88[EUR][1000 genomes]
rs11185855	0.88[EUR][1000 genomes]
rs11185858	0.88[EUR][1000 genomes]
rs11185861	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs11185864	0.88[EUR][1000 genomes]
rs11185866	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11185870	0.87[EUR][1000 genomes]
rs11185878	0.86[EUR][1000 genomes]
rs11185880	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11185881	0.86[EUR][1000 genomes]
rs1126480	0.87[EUR][1000 genomes]
rs11813204	0.82[EUR][1000 genomes]
rs11813214	0.86[EUR][1000 genomes]
rs11816741	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs12218194	0.97[EUR][1000 genomes]
rs12243552	0.86[EUR][1000 genomes]
rs12247868	0.87[EUR][1000 genomes]
rs12248156	0.88[EUR][1000 genomes]
rs12249500	0.87[EUR][1000 genomes]
rs12250365	0.82[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12253793	0.86[EUR][1000 genomes]
rs12254296	0.86[EUR][1000 genomes]
rs12256229	0.84[EUR][1000 genomes]
rs12264026	0.86[EUR][1000 genomes]
rs12264044	0.86[EUR][1000 genomes]
rs12571268	0.83[JPT][hapmap]
rs12571918	0.85[JPT][hapmap]
rs12572012	0.86[JPT][hapmap]
rs12572608	0.86[JPT][hapmap]
rs12572869	0.86[JPT][hapmap]
rs12573024	0.82[GIH][hapmap]
rs12573060	0.82[GIH][hapmap]
rs12767644	0.94[CEU][hapmap]
rs12769113	0.85[EUR][1000 genomes]
rs12773740	0.81[EUR][1000 genomes]
rs12773865	0.88[EUR][1000 genomes]
rs12779880	0.92[EUR][1000 genomes]
rs12783845	0.82[JPT][hapmap]
rs12948	0.86[EUR][1000 genomes]
rs1409358	1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]
rs1555868	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17125278	1.00[CEU][hapmap]
rs17125834	0.86[JPT][hapmap]
rs17126269	0.86[JPT][hapmap]
rs17127001	0.86[JPT][hapmap]
rs1886997	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs1886998	0.88[EUR][1000 genomes]
rs1887037	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2017527	0.87[EUR][1000 genomes]
rs2026549	0.87[EUR][1000 genomes]
rs2026550	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs2026551	0.87[EUR][1000 genomes]
rs2077946	0.87[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs2094212	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2094213	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2182396	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs2418928	0.88[EUR][1000 genomes]
rs2418929	0.86[JPT][hapmap]
rs2420640	0.82[GIH][hapmap]
rs34135002	0.84[EUR][1000 genomes]
rs35929113	0.88[EUR][1000 genomes]
rs3740035	0.85[JPT][hapmap]
rs3740036	0.87[EUR][1000 genomes]
rs3740037	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs3758384	0.88[EUR][1000 genomes]
rs3758385	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs3758388	0.86[JPT][hapmap]
rs3758389	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824605	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824609	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs3908479	0.97[EUR][1000 genomes]
rs4126596	0.86[EUR][1000 genomes]
rs4558081	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4934493	0.82[GIH][hapmap]
rs4934494	0.86[JPT][hapmap]
rs56664691	0.87[EUR][1000 genomes]
rs61481124	0.87[EUR][1000 genomes]
rs61870788	0.87[EUR][1000 genomes]
rs6586210	0.86[JPT][hapmap]
rs6586217	0.88[EUR][1000 genomes]
rs6586218	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7070916	0.92[EUR][1000 genomes]
rs7073779	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7074093	0.84[EUR][1000 genomes]
rs7074112	0.88[EUR][1000 genomes]
rs7074290	0.88[EUR][1000 genomes]
rs7076259	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7077349	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7081362	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7083351	0.84[ASN][1000 genomes]
rs7085805	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7087240	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7087789	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs7088104	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7088570	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7089108	0.88[EUR][1000 genomes]
rs7089326	0.88[EUR][1000 genomes]
rs7089473	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7090618	0.88[EUR][1000 genomes]
rs7092444	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs7094633	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7095818	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs7096466	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs7096826	0.82[EUR][1000 genomes]
rs7097496	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7098233	0.86[JPT][hapmap]
rs7098988	0.82[GIH][hapmap]
rs7100603	1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]
rs716781	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs727427	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7893678	0.88[EUR][1000 genomes]
rs7895001	0.88[EUR][1000 genomes]
rs7895379	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs7896461	0.86[EUR][1000 genomes]
rs7898670	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7899264	0.88[EUR][1000 genomes]
rs7901438	0.88[EUR][1000 genomes]
rs7902655	0.88[EUR][1000 genomes]
rs7904847	0.88[EUR][1000 genomes]
rs7906112	0.88[EUR][1000 genomes]
rs7907852	1.00[CEU][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7909550	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs7910001	0.88[EUR][1000 genomes]
rs7912347	0.87[EUR][1000 genomes]
rs7912464	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7914590	0.81[EUR][1000 genomes]
rs7919866	0.86[EUR][1000 genomes]
rs7921817	0.86[EUR][1000 genomes]
rs8181361	0.93[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs8181406	0.94[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs9325443	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs9325444	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943129	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs962524	0.94[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs9663129	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs980520	0.88[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10881617	KIF20B	cis	cerebellum	SCAN
rs10881617	LINC00865	cis	Nerve Tibial	GTEx
rs10881617	LINC00865	cis	Artery Tibial	GTEx
rs10881617	IFIT1	cis	cerebellum	SCAN
rs10881617	KIF20B	cis	parietal	SCAN
rs10881617	FLJ37201	cis	parietal	SCAN
rs10881617	RP11-248C1.3	cis	Artery Tibial	GTEx
rs10881617	LIPA	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91419400-91422400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:91419600-91422600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:91419600-91422800	Weak transcription	Fetal Lung	lung
4	chr10:91419600-91422800	Weak transcription	HSMMtube	muscle
5	chr10:91419600-91423000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:91419600-91423600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:91419600-91423600	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:91419800-91422200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:91419800-91422600	Weak transcription	Psoas Muscle	Psoas
10	chr10:91420000-91422400	Weak transcription	NHDF-Ad	bronchial

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