Variant report

Variant	rs11185825
Chromosome Location	chr10:91401849-91401850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:91401825-91402309	SH-SY5Y	brain:	n/a	chr10:91402181-91402191

Variant related genes	Relation type
ENSG00000232936	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10430645	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs10430646	0.94[CEU][hapmap]
rs1048057	0.93[CEU][hapmap]
rs10509579	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs1062465	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs10785896	1.00[CEU][hapmap]
rs10881614	1.00[CEU][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs10881618	1.00[CEU][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap]
rs10881619	1.00[CEU][hapmap]
rs10881628	0.94[CEU][hapmap]
rs10881629	0.94[CEU][hapmap]
rs10881631	0.94[CEU][hapmap]
rs10881632	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10881646	0.85[CEU][hapmap]
rs10881647	0.92[CEU][hapmap]
rs10881664	0.93[CEU][hapmap]
rs10881666	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs11185826	0.87[EUR][1000 genomes]
rs11185861	0.94[CEU][hapmap]
rs11185867	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11185879	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11185880	0.92[CEU][hapmap]
rs11813204	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11816741	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12250365	0.94[CEU][hapmap]
rs12767644	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12769113	0.86[EUR][1000 genomes]
rs12773740	0.87[ASN][1000 genomes]
rs12773865	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12779880	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1409358	1.00[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs1555868	0.94[CEU][hapmap]
rs17125278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886997	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs2026550	0.94[CEU][hapmap]
rs2077946	0.87[CEU][hapmap]
rs2182396	0.93[CEU][hapmap]
rs35754486	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs36190073	0.86[ASN][1000 genomes]
rs3740037	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs3758385	0.94[CEU][hapmap]
rs3824609	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs6586218	0.94[CEU][hapmap]
rs7070916	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074093	0.97[ASN][1000 genomes]
rs7076259	1.00[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs7077349	0.94[CEU][hapmap]
rs7081362	0.94[CEU][hapmap]
rs7085805	0.94[CEU][hapmap]
rs7087240	1.00[CEU][hapmap]
rs7087789	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088104	1.00[CEU][hapmap]
rs7089473	0.94[CEU][hapmap]
rs7092444	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs7095818	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs7096466	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs7096826	0.89[ASN][1000 genomes]
rs7097496	1.00[CEU][hapmap]
rs7100603	1.00[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs716781	1.00[CEU][hapmap]
rs727427	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7895379	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs7898670	0.93[CEU][hapmap]
rs7907852	1.00[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs7909550	0.93[CEU][hapmap]
rs7912464	0.93[CEU][hapmap]
rs7914590	0.87[ASN][1000 genomes]
rs8181361	0.93[CEU][hapmap];0.81[TSI][hapmap]
rs8181406	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.97[ASN][1000 genomes]
rs9325443	1.00[CEU][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs9325444	1.00[CEU][hapmap]
rs962524	0.94[CEU][hapmap];0.81[TSI][hapmap]
rs9663129	0.94[CEU][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11185825	KIF20B	cis	cerebellum	SCAN
rs11185825	LINC00865	cis	Artery Tibial	GTEx
rs11185825	RP11-248C1.3	cis	Artery Tibial	GTEx
rs11185825	IFIT1	cis	cerebellum	SCAN
rs11185825	KIF20B	cis	parietal	SCAN
rs11185825	LINC00865	cis	Nerve Tibial	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
7	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
13	chr10:91386000-91402800	Weak transcription	NH-A	brain
14	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
15	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:91386000-91403200	Weak transcription	Ovary	ovary
18	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
20	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:91392200-91402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:91392600-91403000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:91392600-91403200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:91392600-91403200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:91392800-91402800	Weak transcription	Primary B cells from cord blood	blood
26	chr10:91393000-91403200	Weak transcription	Fetal Thymus	thymus
27	chr10:91393800-91402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:91393800-91402800	Weak transcription	A549	lung
29	chr10:91393800-91403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:91394000-91402800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:91394200-91403000	Weak transcription	Fetal Brain Female	brain
32	chr10:91394400-91403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:91394800-91402000	Weak transcription	NHEK	skin
34	chr10:91394800-91403000	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:91394800-91403200	Weak transcription	HSMM	muscle
36	chr10:91395400-91403800	Weak transcription	Lung	lung
37	chr10:91396000-91403000	Weak transcription	Primary T cells from cord blood	blood
38	chr10:91396000-91403800	Weak transcription	Spleen	Spleen
39	chr10:91396400-91403200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:91397000-91403200	Weak transcription	Fetal Stomach	stomach
41	chr10:91397200-91402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:91397200-91403000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:91397400-91402000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:91397400-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:91397600-91402000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:91397600-91403000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr10:91398200-91402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:91398200-91402000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:91398200-91402000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:91398200-91403000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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