Variant report

Variant	rs61877058
Chromosome Location	chr11:26600213-26600214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26594478..26596618-chr11:26598306..26601067,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11601945	1.00[AFR][1000 genomes]
rs1353140	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243461	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17243468	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61877019	1.00[AFR][1000 genomes]
rs61877020	1.00[AFR][1000 genomes]
rs61877026	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877027	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878562	1.00[ASN][1000 genomes]
rs61878564	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878565	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878566	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878567	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878568	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878572	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878588	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878589	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878592	0.86[ASN][1000 genomes]
rs61878594	0.86[ASN][1000 genomes]
rs61878597	0.86[ASN][1000 genomes]
rs61878598	0.86[ASN][1000 genomes]
rs61878600	0.86[ASN][1000 genomes]
rs61878601	0.86[ASN][1000 genomes]
rs61878602	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26594400-26601200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:26599200-26601000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26599800-26601600	Enhancers	NHEK	skin
4	chr11:26600000-26600400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:26600000-26601600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:26600000-26601600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26600000-26601800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:26600200-26601400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:26600200-26601600	Enhancers	HMEC	breast
10	chr11:26600200-26602800	Enhancers	Fetal Lung	lung
11	chr11:26600200-26603600	Enhancers	Muscle Satellite Cultured Cells	--

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