Variant report

Variant	rs17243468
Chromosome Location	chr11:26608776-26608777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1134709	0.80[AMR][1000 genomes]
rs1134710	0.80[AMR][1000 genomes]
rs11601945	1.00[AFR][1000 genomes]
rs1353140	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17243461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243482	0.80[AMR][1000 genomes]
rs17243566	0.80[AMR][1000 genomes]
rs17243594	0.80[AMR][1000 genomes]
rs17309272	0.80[AMR][1000 genomes]
rs17309286	0.80[AMR][1000 genomes]
rs17309307	0.80[AMR][1000 genomes]
rs17309321	0.80[AMR][1000 genomes]
rs61877019	1.00[AFR][1000 genomes]
rs61877020	1.00[AFR][1000 genomes]
rs61877026	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61877027	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61877056	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61877057	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61877058	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61877059	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61877275	0.80[AMR][1000 genomes]
rs61877277	0.80[AMR][1000 genomes]
rs61877281	0.80[AMR][1000 genomes]
rs61877300	0.80[AMR][1000 genomes]
rs61877302	0.80[AMR][1000 genomes]
rs61877303	0.80[AMR][1000 genomes]
rs61877305	0.80[AMR][1000 genomes]
rs61877306	0.80[AMR][1000 genomes]
rs61877308	0.80[AMR][1000 genomes]
rs61878562	0.86[ASN][1000 genomes]
rs61878564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878592	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878594	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878597	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878598	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878600	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878601	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878602	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878609	1.00[AMR][1000 genomes]
rs61878611	0.80[AMR][1000 genomes]
rs61878612	0.80[AMR][1000 genomes]
rs61878639	0.80[AMR][1000 genomes]
rs61878640	0.80[AMR][1000 genomes]
rs61878641	0.80[AMR][1000 genomes]
rs61878642	0.80[AMR][1000 genomes]
rs61878643	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv10740	chr11:26607958-26610913	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv522526	chr11:26608497-26610518	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv553900	chr11:26608497-26610759	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv553901	chr11:26608497-26611796	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv553902	chr11:26608602-26610759	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv553903	chr11:26608661-26610759	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv553904	chr11:26608776-26610759	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26603800-26623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:26604000-26623600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26606800-26614600	Weak transcription	Placenta	Placenta
5	chr11:26607600-26635400	Weak transcription	Adipose Nuclei	Adipose
6	chr11:26608600-26609200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:26608600-26609200	Enhancers	NHEK	skin

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