Variant report

Variant	rs61877308
Chromosome Location	chr11:26699063-26699064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1134709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1134710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17243461	0.80[AMR][1000 genomes]
rs17243468	0.80[AMR][1000 genomes]
rs17243482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17243566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17243594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17309272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17309286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17309307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17309321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877059	0.90[AMR][1000 genomes]
rs61877275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61878564	0.80[AMR][1000 genomes]
rs61878565	0.80[AMR][1000 genomes]
rs61878566	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878567	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878568	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878572	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878588	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878589	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61878592	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878594	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878597	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878598	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878600	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878601	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878602	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61878609	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61878611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878639	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878641	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26697000-26699800	Enhancers	NHEK	skin
4	chr11:26698400-26699800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:26698400-26699800	Enhancers	HMEC	breast
6	chr11:26698600-26699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:26698800-26699800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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