Variant report

Variant	rs61877059
Chromosome Location	chr11:26604143-26604144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1134709	0.90[AMR][1000 genomes]
rs1134710	0.90[AMR][1000 genomes]
rs1353140	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243461	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17243468	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17243482	0.90[AMR][1000 genomes]
rs17243566	0.90[AMR][1000 genomes]
rs17243594	0.90[AMR][1000 genomes]
rs17309272	0.90[AMR][1000 genomes]
rs17309286	0.90[AMR][1000 genomes]
rs17309307	0.90[AMR][1000 genomes]
rs17309321	0.90[AMR][1000 genomes]
rs61877026	1.00[ASN][1000 genomes]
rs61877027	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877056	1.00[EUR][1000 genomes]
rs61877057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877275	0.90[AMR][1000 genomes]
rs61877277	0.90[AMR][1000 genomes]
rs61877281	0.90[AMR][1000 genomes]
rs61877300	0.90[AMR][1000 genomes]
rs61877302	0.90[AMR][1000 genomes]
rs61877303	0.90[AMR][1000 genomes]
rs61877305	0.90[AMR][1000 genomes]
rs61877306	0.90[AMR][1000 genomes]
rs61877308	0.90[AMR][1000 genomes]
rs61878562	1.00[ASN][1000 genomes]
rs61878564	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878565	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878566	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878567	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878568	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878572	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878588	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878589	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61878592	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878594	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878597	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878598	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878600	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878601	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878602	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61878609	0.90[AMR][1000 genomes]
rs61878611	0.90[AMR][1000 genomes]
rs61878612	0.90[AMR][1000 genomes]
rs61878639	0.90[AMR][1000 genomes]
rs61878640	0.90[AMR][1000 genomes]
rs61878641	0.90[AMR][1000 genomes]
rs61878642	0.90[AMR][1000 genomes]
rs61878643	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26601600-26604600	Weak transcription	HMEC	breast
3	chr11:26601600-26604800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:26601600-26604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26601600-26604800	Weak transcription	NHEK	skin
6	chr11:26601800-26605000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:26603600-26605200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:26603800-26623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:26604000-26623600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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