Variant report

Variant	rs61881835
Chromosome Location	chr11:16542356-16542357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56797977	1.00[AMR][1000 genomes]
rs6486295	1.00[AMR][1000 genomes]
rs7109800	1.00[AMR][1000 genomes]
rs7131309	1.00[AMR][1000 genomes]
rs73417106	1.00[AMR][1000 genomes]
rs73417110	1.00[AMR][1000 genomes]
rs73417114	1.00[AMR][1000 genomes]
rs73417129	1.00[AMR][1000 genomes]
rs73417131	1.00[AMR][1000 genomes]
rs73417132	1.00[AMR][1000 genomes]
rs73417134	1.00[AMR][1000 genomes]
rs73419003	1.00[AMR][1000 genomes]
rs73435559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933270	1.00[AMR][1000 genomes]
rs7949601	1.00[AMR][1000 genomes]
rs7951322	1.00[AMR][1000 genomes]
rs9666122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16542000-16542600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr11:16542000-16542800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:16542000-16542800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr11:16542200-16542600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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