Variant report

Variant	rs73417129
Chromosome Location	chr11:16582565-16582566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56797977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61881835	1.00[AMR][1000 genomes]
rs6486295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7131309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435559	1.00[AMR][1000 genomes]
rs7931708	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9666122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16573000-16594600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16580000-16582800	Weak transcription	Psoas Muscle	Psoas
3	chr11:16581000-16583000	Weak transcription	Fetal Heart	heart
4	chr11:16581400-16583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16581800-16584200	Weak transcription	Left Ventricle	heart
6	chr11:16581800-16584200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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