Variant report

Variant	rs73417134
Chromosome Location	chr11:16594703-16594704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56797977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61881835	1.00[AMR][1000 genomes]
rs6486295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7131309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435559	1.00[AMR][1000 genomes]
rs7931708	1.00[AMR][1000 genomes]
rs7933270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949601	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9666122	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16584400-16605600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:16593400-16598400	Weak transcription	Left Ventricle	heart
3	chr11:16594000-16594800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:16594000-16595200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16594000-16595400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:16594400-16595200	Enhancers	Fetal Heart	heart
7	chr11:16594600-16594800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:16594600-16595000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:16594600-16595200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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