Variant report

Variant	rs61882794
Chromosome Location	chr11:35268425-35268426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10836346	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17447755	0.86[EUR][1000 genomes]
rs2065005	0.87[EUR][1000 genomes]
rs2065006	0.87[EUR][1000 genomes]
rs61882763	0.86[EUR][1000 genomes]
rs61882764	0.86[EUR][1000 genomes]
rs61882766	0.86[EUR][1000 genomes]
rs61882767	0.87[EUR][1000 genomes]
rs61882768	0.87[EUR][1000 genomes]
rs61882771	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61882792	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61882793	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882800	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61882801	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
3	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
4	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
10	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:35264800-35270000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:35264800-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:35265400-35270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:35265800-35270200	Weak transcription	Pancreas	Pancrea
18	chr11:35265800-35305800	Weak transcription	HepG2	liver
19	chr11:35266000-35269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:35266600-35269200	Enhancers	Fetal Stomach	stomach
21	chr11:35266800-35269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:35266800-35269800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:35266800-35269800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:35267000-35269200	Enhancers	NHDF-Ad	bronchial
25	chr11:35267200-35269400	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:35267400-35269200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:35267400-35269200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:35267400-35269600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:35267600-35268600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:35267600-35269800	Enhancers	Primary T cells from cord blood	blood
31	chr11:35267600-35270200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr11:35267800-35269400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:35267800-35276200	Weak transcription	Right Atrium	heart
34	chr11:35268000-35268600	Enhancers	HSMMtube	muscle
35	chr11:35268000-35269000	Weak transcription	Aorta	Aorta
36	chr11:35268000-35269000	Weak transcription	Left Ventricle	heart
37	chr11:35268000-35269200	Enhancers	Colon Smooth Muscle	Colon
38	chr11:35268200-35268600	Enhancers	Osteobl	bone
39	chr11:35268200-35268800	Enhancers	NHLF	lung
40	chr11:35268400-35269200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:35268400-35269400	Enhancers	Stomach Smooth Muscle	stomach
42	chr11:35268400-35269600	Enhancers	Fetal Heart	heart

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