Variant report

Variant	rs61882768
Chromosome Location	chr11:35239020-35239021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr11:35238516-35239253	HCT-116	colon:	n/a	chr11:35238874-35238884 chr11:35238872-35238888 chr11:35239152-35239166 chr11:35238872-35238888 chr11:35238873-35238887
2	FOXA1	chr11:35238843-35239290	HepG2	liver:	n/a	n/a
3	ZNF384	chr11:35238672-35239150	GM12878	blood:	n/a	n/a
4	CEBPB	chr11:35239012-35239335	H1-hESC	embryonic stem cell:	n/a	chr11:35239180-35239193
5	NR2F2	chr11:35238882-35239315	MCF-7	breast:	n/a	n/a
6	POLR2A	chr11:35238923-35239330	GM12891	blood:	n/a	n/a
7	POLR2A	chr11:35237444-35239434	U87	brain:	n/a	n/a
8	TCF7L2	chr11:35238831-35239021	PANC-1	pancreas:	n/a	chr11:35238874-35238884 chr11:35238872-35238888 chr11:35238872-35238888 chr11:35238873-35238887
9	POLR2A	chr11:35235854-35244123	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr11:35237394-35239434	U87	brain:	n/a	n/a
11	POLR2A	chr11:35238874-35239278	GM12892	blood:	n/a	n/a
12	EP300	chr11:35238888-35239231	HepG2	liver:	n/a	chr11:35239109-35239123 chr11:35238900-35238914 chr11:35238897-35238911
13	FOXA2	chr11:35238957-35239256	HepG2	liver:	n/a	n/a
14	FOS	chr11:35238880-35239031	MCF10A-Er-Src	breast:	n/a	chr11:35238888-35238900 chr11:35238890-35238898
15	POLR2A	chr11:35220356-35243977	U87	brain:	n/a	n/a
16	GATA3	chr11:35238865-35239330	MCF-7	breast:	n/a	chr11:35238888-35238897
17	POLR2A	chr11:35238864-35239411	GM12892	blood:	n/a	n/a
18	POLR2A	chr11:35237308-35239908	PANC-1	pancreas:	n/a	n/a
19	FOXA1	chr11:35238916-35239289	HepG2	liver:	n/a	n/a
20	POLR2A	chr11:35238290-35239406	GM12892	blood:	n/a	n/a
21	CEBPB	chr11:35238977-35239299	HepG2	liver:	n/a	chr11:35239180-35239193
22	TCF7L2	chr11:35238741-35239300	MCF-7	breast:	n/a	chr11:35238874-35238884 chr11:35238872-35238888 chr11:35239152-35239166 chr11:35238872-35238888 chr11:35238873-35238887
23	CEBPB	chr11:35238899-35239279	MCF-7	breast:	n/a	chr11:35239180-35239193
24	FOXA1	chr11:35238862-35239263	HepG2	liver:	n/a	n/a
25	ZNF217	chr11:35238661-35239291	MCF-7	breast:	n/a	n/a
26	FOXA1	chr11:35238946-35239338	HepG2	liver:	n/a	n/a
27	POLR2A	chr11:35238994-35239230	ProgFib	skin:	n/a	n/a
28	POLR2A	chr11:35238880-35239316	Hela-S3	cervix:	n/a	n/a
29	FOS	chr11:35238877-35239058	MCF10A-Er-Src	breast:	n/a	chr11:35238888-35238900 chr11:35238890-35238898
30	POLR2A	chr11:35237283-35244142	U87	brain:	n/a	n/a
31	EP300	chr11:35238864-35239294	HepG2	liver:	n/a	chr11:35239109-35239123 chr11:35238900-35238914 chr11:35238897-35238911

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35234685..35237294-chr11:35237547..35239345,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255443	TF binding region
CD44	TF binding region
ENSG00000026508	Chromatin interaction
ENSG00000255443	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10836346	0.90[EUR][1000 genomes]
rs17447755	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2065005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2065006	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61882763	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882764	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882766	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882771	0.90[EUR][1000 genomes]
rs61882792	0.85[EUR][1000 genomes]
rs61882793	0.87[EUR][1000 genomes]
rs61882794	0.87[EUR][1000 genomes]
rs61882799	0.87[EUR][1000 genomes]
rs61882800	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
2	chr11:35214200-35240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:35215600-35241200	Weak transcription	Small Intestine	intestine
5	chr11:35222600-35240600	Weak transcription	Spleen	Spleen
6	chr11:35224000-35241600	Weak transcription	Left Ventricle	heart
7	chr11:35226200-35244800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35227800-35240400	Weak transcription	Colonic Mucosa	Colon
9	chr11:35231400-35240400	Weak transcription	Fetal Lung	lung
10	chr11:35231600-35243600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:35232200-35245400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:35232400-35245600	Genic enhancers	NHDF-Ad	bronchial
13	chr11:35232800-35239800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:35232800-35240600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:35233200-35244400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:35233400-35259600	Weak transcription	Liver	Liver
17	chr11:35234000-35239200	Genic enhancers	Primary B cells from cord blood	blood
18	chr11:35234000-35239200	Genic enhancers	HMEC	breast
19	chr11:35234000-35239800	Genic enhancers	Primary T cells from cord blood	blood
20	chr11:35234000-35239800	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr11:35234000-35239800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:35234200-35247400	Weak transcription	Fetal Intestine Small	intestine
23	chr11:35234600-35240200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:35234600-35241600	Genic enhancers	NHLF	lung
25	chr11:35234800-35239200	Genic enhancers	NHEK	skin
26	chr11:35234800-35239400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr11:35234800-35240400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr11:35235200-35239400	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr11:35235200-35249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:35235800-35239200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:35235800-35239400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
32	chr11:35235800-35244200	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:35236000-35239200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:35236000-35239200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr11:35236000-35239200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr11:35236000-35243000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:35236000-35245200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:35236000-35247600	Strong transcription	Dnd41	blood
39	chr11:35236000-35248000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr11:35236200-35239200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:35236200-35239400	Genic enhancers	Primary monocytes fromperipheralblood	blood
42	chr11:35236200-35242000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:35236200-35252200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:35236400-35239200	Strong transcription	Fetal Stomach	stomach
46	chr11:35236400-35239200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:35236400-35239400	Strong transcription	Duodenum Mucosa	Duodenum
48	chr11:35236400-35239400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:35236400-35240600	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr11:35236400-35241800	Strong transcription	A549	lung

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