Variant report

Variant	rs61882799
Chromosome Location	chr11:35271539-35271540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10836346	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17447755	0.86[EUR][1000 genomes]
rs2065005	0.87[EUR][1000 genomes]
rs2065006	0.87[EUR][1000 genomes]
rs61882763	0.86[EUR][1000 genomes]
rs61882764	0.86[EUR][1000 genomes]
rs61882766	0.86[EUR][1000 genomes]
rs61882767	0.87[EUR][1000 genomes]
rs61882768	0.87[EUR][1000 genomes]
rs61882771	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61882792	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61882793	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882800	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61882801	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:35265800-35305800	Weak transcription	HepG2	liver
4	chr11:35267800-35276200	Weak transcription	Right Atrium	heart
5	chr11:35268600-35274400	Weak transcription	Osteobl	bone
6	chr11:35269000-35274200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:35269400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:35270200-35271600	Enhancers	Aorta	Aorta
9	chr11:35270200-35278200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:35270200-35292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:35270400-35271600	Weak transcription	Fetal Lung	lung
12	chr11:35270400-35272000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:35270400-35272200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:35270400-35272800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:35270400-35273800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:35270400-35273800	Weak transcription	NHLF	lung
17	chr11:35270400-35274000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:35270400-35274000	Weak transcription	NHDF-Ad	bronchial
19	chr11:35270400-35274600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:35270400-35274800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:35270400-35275000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:35270400-35277600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:35270400-35277600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:35270400-35285400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
27	chr11:35270600-35272200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:35270600-35275800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:35270600-35277600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:35270600-35277600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:35270600-35278000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:35270600-35278000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:35270600-35281000	Weak transcription	Fetal Brain Female	brain
34	chr11:35270600-35284400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:35271200-35277400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:35271200-35286400	Weak transcription	Pancreas	Pancrea
37	chr11:35271400-35271600	Enhancers	Lung	lung

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