Variant report

Variant	rs61886494
Chromosome Location	chr11:49186653-49186654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs17743539	0.87[EUR][1000 genomes]
rs17815807	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17821682	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2002868	0.87[AMR][1000 genomes]
rs2031086	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2866146	0.87[AMR][1000 genomes]
rs34534366	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3868868	0.87[AMR][1000 genomes]
rs3872565	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4103565	0.81[EUR][1000 genomes]
rs55659758	0.87[EUR][1000 genomes]
rs55677078	0.87[EUR][1000 genomes]
rs55869423	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55956951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55987311	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56039736	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61885250	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61885251	0.87[AMR][1000 genomes]
rs61886467	0.87[AMR][1000 genomes]
rs61886480	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886481	1.00[AMR][1000 genomes]
rs61886482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61886483	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886486	0.87[AMR][1000 genomes]
rs61886487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61886489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61886492	0.86[EUR][1000 genomes]
rs61886493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886509	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886511	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886512	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886517	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886529	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886530	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886531	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886532	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886534	0.87[EUR][1000 genomes]
rs61886537	0.87[EUR][1000 genomes]
rs61886538	0.87[EUR][1000 genomes]
rs61886539	0.87[EUR][1000 genomes]
rs6485967	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7106778	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7113939	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7116845	0.87[AMR][1000 genomes]
rs7119205	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7120140	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122398	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7123690	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124497	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7126361	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7126472	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7126892	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7925435	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7930322	0.87[EUR][1000 genomes]
rs7940887	1.00[AFR][1000 genomes]
rs7944183	0.87[AMR][1000 genomes]
rs7944746	0.87[AMR][1000 genomes]
rs7945223	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv983013	chr11:49186292-49187522	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49171400-49197600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:49171600-49190800	Weak transcription	Small Intestine	intestine
3	chr11:49176200-49186800	Weak transcription	Ovary	ovary
4	chr11:49183400-49190000	Strong transcription	Fetal Intestine Large	intestine
5	chr11:49183800-49186800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr11:49184200-49193400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:49184400-49186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:49184800-49208400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:49185600-49188200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:49185600-49189000	Weak transcription	Fetal Intestine Small	intestine
11	chr11:49185600-49190600	Weak transcription	Fetal Stomach	stomach
12	chr11:49185600-49194000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:49185600-49201800	Weak transcription	Fetal Lung	lung
14	chr11:49186200-49195600	Weak transcription	Liver	Liver

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