Variant report

Variant	rs3872565
Chromosome Location	chr11:49166856-49166857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs17815807	0.87[AMR][1000 genomes]
rs17821682	0.87[AMR][1000 genomes]
rs2002868	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2031086	0.87[AMR][1000 genomes]
rs2866146	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34534366	0.87[AMR][1000 genomes]
rs3868868	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55869423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55956951	0.87[AMR][1000 genomes]
rs55987311	0.87[AMR][1000 genomes]
rs56039736	0.87[AMR][1000 genomes]
rs61885250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61885251	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886467	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886481	0.87[AMR][1000 genomes]
rs61886482	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61886483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886486	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61886487	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61886489	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61886493	0.87[AMR][1000 genomes]
rs61886494	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886495	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886498	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886507	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886509	0.87[AMR][1000 genomes]
rs61886511	0.87[AMR][1000 genomes]
rs61886512	0.87[AMR][1000 genomes]
rs61886517	0.87[AMR][1000 genomes]
rs61886529	0.87[AMR][1000 genomes]
rs61886530	0.87[AMR][1000 genomes]
rs61886531	0.87[AMR][1000 genomes]
rs61886532	0.87[AMR][1000 genomes]
rs6485967	0.87[AMR][1000 genomes]
rs7106778	0.87[AMR][1000 genomes]
rs7113939	0.87[AMR][1000 genomes]
rs7116845	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7119205	0.87[AMR][1000 genomes]
rs7120140	0.87[AMR][1000 genomes]
rs7122398	0.87[AMR][1000 genomes]
rs7123690	0.87[AMR][1000 genomes]
rs7124497	0.87[AMR][1000 genomes]
rs7126361	0.87[AMR][1000 genomes]
rs7126472	0.87[AMR][1000 genomes]
rs7126892	0.87[AMR][1000 genomes]
rs7925435	0.87[AMR][1000 genomes]
rs7940887	1.00[AFR][1000 genomes]
rs7944183	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7944746	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7945223	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49164200-49169200	Weak transcription	Fetal Intestine Large	intestine
2	chr11:49164600-49184200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:49165600-49167800	Weak transcription	Liver	Liver
4	chr11:49165800-49168800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:49166000-49184200	Weak transcription	Brain Hippocampus Middle	brain

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