Variant report

Variant	rs61926164
Chromosome Location	chr12:32714901-32714902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs61926163	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926168	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926169	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926170	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926171	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926172	1.00[EUR][1000 genomes]
rs61926173	1.00[EUR][1000 genomes]
rs61926174	1.00[EUR][1000 genomes]
rs61926176	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926186	0.81[EUR][1000 genomes]
rs61926187	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926188	0.81[EUR][1000 genomes]
rs61926189	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926190	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926191	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926192	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926193	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926194	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926195	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62642552	0.81[EUR][1000 genomes]
rs74072673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3342938	chr12:32551041-32716745	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1037224	chr12:32698189-32721994	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv541456	chr12:32698189-32721994	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv973958	chr12:32712509-32726963	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32693000-32729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:32698800-32719600	Weak transcription	Colonic Mucosa	Colon
3	chr12:32702000-32719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:32702000-32719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:32702800-32717200	Weak transcription	HUVEC	blood vessel
6	chr12:32703000-32717000	Weak transcription	HMEC	breast
7	chr12:32703000-32717200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:32703000-32719400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:32703200-32719000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:32704200-32719800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:32710400-32715400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:32711400-32715400	Enhancers	HepG2	liver
13	chr12:32711800-32717000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:32711800-32719800	Weak transcription	Gastric	stomach
15	chr12:32711800-32724800	Weak transcription	Fetal Brain Male	brain
16	chr12:32712000-32717000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr12:32712200-32717000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr12:32712200-32719000	Weak transcription	Aorta	Aorta
19	chr12:32712600-32738600	Weak transcription	Primary B cells from cord blood	blood
20	chr12:32712800-32715200	Enhancers	Lung	lung
21	chr12:32713000-32717000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr12:32713000-32717000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr12:32713000-32717000	Weak transcription	NHEK	skin
24	chr12:32713000-32719400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:32713000-32719800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr12:32713200-32715200	Enhancers	Ovary	ovary
28	chr12:32713200-32717000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr12:32713400-32717000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:32713400-32719200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
32	chr12:32713800-32715000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:32713800-32717000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr12:32713800-32717200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:32713800-32738400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:32714000-32740600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr12:32714200-32715400	Enhancers	Adipose Nuclei	Adipose
38	chr12:32714400-32715200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr12:32714400-32715400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr12:32714400-32715400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr12:32714400-32715400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr12:32714600-32715000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr12:32714600-32715000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr12:32714600-32715000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr12:32714600-32715200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr12:32714600-32715200	Enhancers	Liver	Liver
47	chr12:32714600-32715200	Enhancers	Brain Angular Gyrus	brain
48	chr12:32714600-32715200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr12:32714600-32715400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:32714600-32715400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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