Variant report

Variant	rs61926171
Chromosome Location	chr12:32725828-32725829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs61926163	1.00[EUR][1000 genomes]
rs61926164	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926172	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926173	1.00[EUR][1000 genomes]
rs61926174	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926176	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926186	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926187	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926188	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926189	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926190	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926191	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926192	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926193	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926194	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926195	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62642552	0.81[EUR][1000 genomes]
rs74072673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv973958	chr12:32712509-32726963	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32693000-32729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:32712600-32738600	Weak transcription	Primary B cells from cord blood	blood
3	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
5	chr12:32713800-32738400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:32714000-32740600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr12:32715200-32735000	Weak transcription	Placenta	Placenta
8	chr12:32715200-32753800	Weak transcription	Fetal Brain Female	brain
9	chr12:32715200-32760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:32715400-32730600	Weak transcription	Fetal Stomach	stomach
11	chr12:32719800-32741400	Weak transcription	Spleen	Spleen
12	chr12:32720000-32728000	Weak transcription	Liver	Liver
13	chr12:32720000-32764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr12:32720400-32729000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:32720400-32732200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr12:32720600-32729200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:32720600-32732200	Weak transcription	Esophagus	oesophagus
19	chr12:32720800-32728200	Weak transcription	Aorta	Aorta
20	chr12:32721400-32743600	Weak transcription	Fetal Heart	heart
21	chr12:32722200-32728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:32722200-32738600	Weak transcription	Brain Anterior Caudate	brain
23	chr12:32722400-32728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:32722400-32729000	Weak transcription	HUVEC	blood vessel
25	chr12:32722400-32729200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr12:32722400-32731200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:32722400-32734800	Weak transcription	Brain Germinal Matrix	brain
28	chr12:32722600-32726400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:32722600-32726600	Weak transcription	Fetal Kidney	kidney
30	chr12:32722600-32726600	Weak transcription	NHDF-Ad	bronchial
31	chr12:32722600-32726800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:32722600-32727600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr12:32722600-32727600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr12:32722600-32727600	Weak transcription	Pancreas	Pancrea
35	chr12:32722600-32727600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr12:32722600-32728000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:32722600-32728000	Weak transcription	Fetal Intestine Small	intestine
38	chr12:32722600-32728200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:32722600-32728200	Weak transcription	Fetal Muscle Leg	muscle
40	chr12:32722600-32728200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr12:32722600-32729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr12:32722600-32729000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr12:32722600-32729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:32722600-32729200	Weak transcription	Adipose Nuclei	Adipose
45	chr12:32722600-32730400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr12:32722600-32730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:32722600-32730800	Weak transcription	Fetal Intestine Large	intestine
48	chr12:32722600-32731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr12:32722600-32731200	Weak transcription	Hela-S3	cervix
50	chr12:32722600-32732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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