Variant report

Variant	rs61926168
Chromosome Location	chr12:32718567-32718568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs61926163	1.00[EUR][1000 genomes]
rs61926164	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926172	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926173	1.00[EUR][1000 genomes]
rs61926174	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61926176	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926186	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926187	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926188	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926189	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926190	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926191	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926192	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926193	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926194	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61926195	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62642552	0.81[EUR][1000 genomes]
rs74072673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1037224	chr12:32698189-32721994	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv541456	chr12:32698189-32721994	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv973958	chr12:32712509-32726963	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32693000-32729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:32698800-32719600	Weak transcription	Colonic Mucosa	Colon
3	chr12:32702000-32719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:32702000-32719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:32703000-32719400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:32703200-32719000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:32704200-32719800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:32711800-32719800	Weak transcription	Gastric	stomach
9	chr12:32711800-32724800	Weak transcription	Fetal Brain Male	brain
10	chr12:32712200-32719000	Weak transcription	Aorta	Aorta
11	chr12:32712600-32738600	Weak transcription	Primary B cells from cord blood	blood
12	chr12:32713000-32719400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:32713000-32719800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:32713400-32719200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
17	chr12:32713800-32738400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:32714000-32740600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr12:32714800-32720000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr12:32715200-32719000	Weak transcription	Pancreas	Pancrea
21	chr12:32715200-32719000	Weak transcription	Psoas Muscle	Psoas
22	chr12:32715200-32719000	Weak transcription	Right Atrium	heart
23	chr12:32715200-32719000	Weak transcription	Right Ventricle	heart
24	chr12:32715200-32719000	Weak transcription	Spleen	Spleen
25	chr12:32715200-32719400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:32715200-32719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:32715200-32720200	Weak transcription	Small Intestine	intestine
28	chr12:32715200-32720200	Weak transcription	NHLF	lung
29	chr12:32715200-32722200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr12:32715200-32735000	Weak transcription	Placenta	Placenta
31	chr12:32715200-32753800	Weak transcription	Fetal Brain Female	brain
32	chr12:32715200-32760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr12:32715400-32718600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr12:32715400-32718800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr12:32715400-32719000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr12:32715400-32719000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr12:32715400-32719400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:32715400-32719600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:32715400-32719600	Weak transcription	NHDF-Ad	bronchial
40	chr12:32715400-32730600	Weak transcription	Fetal Stomach	stomach
41	chr12:32716400-32719800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:32717000-32718600	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr12:32717000-32718800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:32717000-32719000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr12:32717000-32719000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:32717000-32719000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr12:32717000-32719400	Strong transcription	HSMM	muscle
48	chr12:32717000-32720000	Strong transcription	Liver	Liver
49	chr12:32717000-32722200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:32717000-32723000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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