Variant report

Variant	rs61937747
Chromosome Location	chr12:118228465-118228466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11832804	1.00[ASN][1000 genomes]
rs35724007	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61937744	0.91[EUR][1000 genomes]
rs61937746	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118210000-118230800	Weak transcription	Pancreas	Pancrea
2	chr12:118226000-118229800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:118226200-118229600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:118226800-118228800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:118226800-118228800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:118226800-118228800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:118226800-118228800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:118226800-118229000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:118227000-118229600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:118227600-118230800	Weak transcription	Spleen	Spleen
11	chr12:118228200-118228600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:118228400-118228600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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