Variant report

Variant	rs61937746
Chromosome Location	chr12:118228358-118228359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1078653	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11068675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11068678	0.83[EUR][1000 genomes]
rs11832804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585881	0.82[AMR][1000 genomes]
rs35724007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56138435	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56296939	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56918257	0.86[AMR][1000 genomes]
rs61937747	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61939862	0.90[AMR][1000 genomes]
rs61939864	0.80[AMR][1000 genomes]
rs6490153	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6490155	0.86[AMR][1000 genomes]
rs7309450	0.80[AMR][1000 genomes]
rs7960031	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118210000-118230800	Weak transcription	Pancreas	Pancrea
2	chr12:118226000-118228400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr12:118226000-118229800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:118226200-118229600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:118226800-118228400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:118226800-118228800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:118226800-118228800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:118226800-118228800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:118226800-118228800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:118226800-118229000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:118227000-118228400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:118227000-118229600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:118227400-118228400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr12:118227600-118230800	Weak transcription	Spleen	Spleen
15	chr12:118228000-118228400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:118228200-118228600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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