Variant report

Variant	rs56138435
Chromosome Location	chr12:118237160-118237161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1078653	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11068675	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11068678	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832804	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17585881	0.92[ASN][1000 genomes]
rs35724007	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4547183	0.83[ASN][1000 genomes]
rs56296939	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61937746	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61939860	0.86[ASN][1000 genomes]
rs6490153	0.82[EUR][1000 genomes]
rs6490155	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118232600-118246400	Weak transcription	Pancreas	Pancrea
2	chr12:118232800-118239400	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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